Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02999 ATGCACGCCGATCCAGGTCCTATTCCATCACGCTCAATAAACCCTCTCCTTTCGCTTCTCTTTTCAAACTCCCAAACCATAAAACCCCAAACCCCCTCATCGTTTTCTTCCTCTATTCTCTCTCACTTTGCAGTCTCCAACCCTACGGTTCGCTTACCCAATCAATCCAATTCCAAATACGAATCCTTCCATTCCAACACGATGTCGTATCGGCCGACAGCTAACTCCAGGACCGAGCTTCGTCGGAACCGTTACAAAGTCGCCGTGGACGCCGATGAAGGTCGGCGGAGGCGAGAGGACACCATGGTGGAGATTCGAAAGAACCGTAGGGAGGAGAGTTTGCAGAAGAAGAGACGCGAGGGTCTTCAATCTCAGCAGATTCCTGCGTCAGCTCACTCCACTGCAATAGAAAAGAAGTTGGAACACCTACCAGCCATGGTTGCAGGCATTTGGACTAATGACAATAACATGCAGTTTGAGACCACGACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCTGGTGTAGTGCCACGGTTTGTTGAGTTTTTGATGAGGGAAGATTTTCCAATGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAATACTAAAGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGTGATTCTCCTAGATGCCGAGATCTTGTTCTCAGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTAAATGAGCATGCCAAACTTTCTATGCTAAGAAATGCTACTTGGACACTCTCAAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCTGCTCTTGCCAATCTTATCCATTCAAATGACGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGACGGTACAAACGACAAAATTCAGGGCGTAATTGAAACTGGTGTTTGTAGCCGGCTTGTGGAGCTTCTAACGCACACTTCCCCGTCAGTGCTTATTCCTGCACTTCGTACTGTTGGAAATATTGTCACTGGAGATGATTTGCAGACCCAGATCATCATCAACCATCAAGCTCTTTCTCGTCTTTTGAATCTCTTGGCCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGCTGGACTATATCGAACATCACAGCTGGGAACAAACAACAGATTCAGGATGTAATTGAGGCTGGTCTAATTGCTCCTCTAGTCCATTTACTCCAAAATGCTGAGTTTGATATTAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCAGGTGGATCTCATGAGCAAATCAAGTTCCTTGTAAATCAGGGATGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATCTTGAAGGTAGGAGAAGCTGAGAAAAATGTGAGCAATACTGATGGCGTGAATATATATGGCCAAATGATTGATGATGCTGAGGGATTAGAGAAAATTGAGAACCTACAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATACTGGACGGAGGAAGATGATGAAACTGTGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTGGCCACGAATTTCCTTCAGTGCCTTCTGGTGGTTTCAACTTTAATTAG 1800 0.445 MHADPGPIPSRSINPLLSLLFSNSQTIKPQTPSSFSSSILSHFAVSNPTVRLPNQSNSKYESFHSNTMSYRPTANSRTELRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASAHSTAIEKKLEHLPAMVAGIWTNDNNMQFETTTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLMREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIETGVCSRLVELLTHTSPSVLIPALRTVGNIVTGDDLQTQIIINHQALSRLLNLLANNYKKSIKKEACWTISNITAGNKQQIQDVIEAGLIAPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVNQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNVSNTDGVNIYGQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWTEEDDETVPPGDASQSGFNFGGHEFPSVPSGGFNFN 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02999 599 Gene3D - 141 564 IPR011989 -
Viun1g02999 599 FunFam Importin subunit alpha 80 119 - -
Viun1g02999 599 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 311 353 IPR000225 GO:0005515
Viun1g02999 599 FunFam Importin subunit alpha 141 564 - -
Viun1g02999 599 Pfam Importin beta binding domain 81 163 IPR002652 GO:0006606|GO:0061608
Viun1g02999 599 SMART arm_5 173 214 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 427 467 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 342 382 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 216 256 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 470 510 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 257 299 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 301 340 IPR000225 GO:0005515
Viun1g02999 599 SMART arm_5 384 425 IPR000225 GO:0005515
Viun1g02999 599 PIRSF Importin_alpha 72 598 IPR024931 GO:0005737|GO:0006606|GO:0061608
Viun1g02999 599 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 227 269 IPR000225 GO:0005515
Viun1g02999 599 SUPERFAMILY ARM repeat 81 568 IPR016024 -
Viun1g02999 599 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 466 IPR000225 GO:0005515
Viun1g02999 599 MobiDBLite consensus disorder prediction 108 130 - -
Viun1g02999 599 Gene3D - 79 119 IPR036975 GO:0006606
Viun1g02999 599 Pfam Atypical Arm repeat 525 570 IPR032413 -
Viun1g02999 599 PANTHER IMPORTIN ALPHA 81 568 - -
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 258 299 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 385 425 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 427 466 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 345 381 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 312 339 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 174 214 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 471 508 IPR000225 GO:0005515
Viun1g02999 599 Pfam Armadillo/beta-catenin-like repeat 216 255 IPR000225 GO:0005515
Viun1g02999 599 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 227 IPR000225 GO:0005515
Viun1g02999 599 ProSiteProfiles IBB domain profile. 65 127 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02999 Viun-Chr1 38555097 38562315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02999 199 459 U-box Gene Family AT3G46510 24.138 4.67e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02999 K15042 - gmx:100806288 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02999 1 38555097 38562315 Viun7g02022 7 25158769 25163765 ECH
Viun7g02022 7 25158769 25163765 Viun1g02999 1 38555097 38562315 ECH
Viun1g02999 1 38555097 38562315 Viun1g02999 1 38555097 38562315 ECH
Viun1g02999 1 38555097 38562315 Viun7g02022 7 25158769 25163765 PCT