Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02979 ATGGAAGCTGTTTACAGGTTGAAACCCCTTTTGCCTTGTGTTGAGGATGTGGTTAGAGTTGCTACTACTTCTGATATGCGTCTAGGAACAACAACACCTAATTGCTACCTGCAGCTAGAAGCACCTGAACCCGACGTAACCGAGTCAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATAGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGTCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCCCGCCGAGAGAAAGGGGACGGTCCTGAACTTGACCAGTTCATGGAAATGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCTACTTTGTTCTTGGGAAACATGGAATCACAACTAAGCAACCTTTGTAATAATGGAACACTGATGAAGTCAACCGATAACAACCGCTCCGGTGGCGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGATCATATATCTTCTTTAAGTTGCCCAGGTGATCAAAATCTGAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAGTTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTCGCCGTCATGGATGGGTTAAGTGGCGGTGCTGGAGGAGCCATGTTCTTTTAG 906 0.4625 MEAVYRLKPLLPCVEDVVRVATTSDMRLGTTTPNCYLQLEAPEPDVTESDMTDRMVKIQIANHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNARREKGDGPELDQFMEMYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNNGTLMKSTDNNRSGGGASEEELSCGEMEEVEDHISSLSCPGDQNLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLSGGAGGAMFF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02979 301 Pfam KNOX2 domain 106 151 IPR005541 GO:0003677|GO:0005634
Viun1g02979 301 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Viun1g02979 301 ProSitePatterns 'Homeobox' domain signature. 254 277 IPR017970 GO:0000981|GO:0006355
Viun1g02979 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 286 - -
Viun1g02979 301 SMART ELK_2 196 217 IPR005539 GO:0003677
Viun1g02979 301 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Viun1g02979 301 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Viun1g02979 301 Gene3D - 214 287 - -
Viun1g02979 301 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Viun1g02979 301 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Viun1g02979 301 SMART HOX_1 218 283 IPR001356 GO:0003677
Viun1g02979 301 Pfam ELK domain 197 217 IPR005539 GO:0003677
Viun1g02979 301 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Viun1g02979 301 SUPERFAMILY Homeodomain-like 218 290 IPR009057 -
Viun1g02979 301 CDD homeodomain 219 279 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02979 Viun-Chr1 38467080 38471590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02979 41 294 Homeobox Transcription Factor Family AT1G23380 51.923 9.15e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun1g02979 KNOX2 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02979 - - gmx:100803095 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02979 1 38467080 38471590 Viun1g02979 1 38467080 38471590 ECH
Viun1g02979 1 38467080 38471590 Viun7g01999 7 24958358 24962276 PCT