Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02978 ATGGAAGCTGTTTACAGGTTGAAACCCCTTTTGCCTTGTGTTGAGGATGTGGTTAGAGTTGCTACTACTTCTGATATGCGTCTAGGAACAACAACACCTAATTGCTACCTGCAGCTAGAAGCACCTGAACCCGACGTAACCGAGTCAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATAGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGTCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCCCGCCGAGAGAAAGGGGACGGTCCTGAACTTGACCAGTTCATGGAAATGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCTACTTTGTTCTTGGGAAACATGGAATCACAACTAAGCAACCTTTGTAATAATGGAACACTGATGAAGTCAACCGATAACAACCGCTCCGTAGGTGGCGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGATCATATATCTTCTTTAAGTTGCCCAGGTGATCAAAATCTGAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAGTTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTCGCCGTCATGGATGGGTTAAGTGGCGGTGCTGGAGGAGCCATGTTCTTTTAG 909 0.462 MEAVYRLKPLLPCVEDVVRVATTSDMRLGTTTPNCYLQLEAPEPDVTESDMTDRMVKIQIANHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNARREKGDGPELDQFMEMYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNNGTLMKSTDNNRSVGGGASEEELSCGEMEEVEDHISSLSCPGDQNLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLSGGAGGAMFF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02978 302 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Viun1g02978 302 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Viun1g02978 302 SMART HOX_1 219 284 IPR001356 GO:0003677
Viun1g02978 302 CDD homeodomain 220 280 IPR001356 GO:0003677
Viun1g02978 302 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Viun1g02978 302 Pfam KNOX2 domain 106 151 IPR005541 GO:0003677|GO:0005634
Viun1g02978 302 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Viun1g02978 302 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Viun1g02978 302 SUPERFAMILY Homeodomain-like 219 291 IPR009057 -
Viun1g02978 302 Pfam ELK domain 198 218 IPR005539 GO:0003677
Viun1g02978 302 Gene3D - 215 288 - -
Viun1g02978 302 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Viun1g02978 302 SMART ELK_2 197 218 IPR005539 GO:0003677
Viun1g02978 302 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Viun1g02978 302 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02978 Viun-Chr1 38467077 38471597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02978 41 295 Homeobox Transcription Factor Family AT1G23380 52.490 5.50e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun1g02978 KNOX2 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02978 - - gmx:100803095 498.049