Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02947 ATGGGCGGAGATGGAGCGACGGCCAACGCGGAGGCGCAGTACGCCTCTGCCAAGATATCAGTGTGGTGGGATATCGAAAACTGCCATGTGCCCAAGGGTTCGGATCCGCACGCGATCGCGCAGAACATCAGCTCCGCGTTGGTTCGCATGAATTACCGCGGCCCTGTCTCCATCTCCGCCTACGGAGACACCGCCACGCGCATCCCACCCTCTGTACAACACGCCCTCTCCAGCACCGGAATTTCCCTCCACCACGTCCCTGCCGGTGTGAAAGACGCAAGTGACAAGAAGATTCTTGTTGACATGCTATTCTGGGCAGTGGATAATCCCGCACCCGCCAATTATTTGTTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTCCGGTTGAGGAAATATAATATTCTTCTTGCGCAACCTCAGAAGGCGTCAGCACCCTTGGTCGCTGCTGCTAAGAATGTATGGCTTTGGACTAGCCTATTAGCGGGAGGACCTCCTCTGTCTAATGGTGAATCACAACAACTCGGTAATGGTAGCCTTAGCCATGTCTCATCTTCTGACTCCTTACAAATCCCAGTTACAAGTACTTCTCAGATGCAGCAACAAGTGGAATCCCATTCAGAAGTTCATGCAGGAAATTCAAAATTTCCAAATGGAGGCAGGGGATTCGACGCTAGGTTTCAGGGTAAACCTAATTGGAGAAACCCGAGCCAATCAAATGCACCCAGAGCCATGAATCCACTGCCACCTGGACCTCATGATAATCGTAATCGTAATAATATAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTCCCGCTGAGTGGATCTGCTACAAATTATGTTCATGGTAACAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAAGACCAAATAACTTCCCATTGCAGCCTCCTTTTGCACCTAGTAATTCATATACTCCAAATCCCCATACTTTTGCACCTCCAACAGTGCCACCTAGGACTGGTGGACCCAATTTCAATTCAGGGCCACATACCAATGTGCCAGATATTGGTAATCTAAACATTTCGGGATATCCTAATAGTGTTCATAACCCACCACCAACTATTCAACAACGGAATGGAGATTTGAAACAAAATCCTAACAGTAGTGCTCCACATCTTTTAAGATCAATTGATGAAAAAAATGGACATGTGGCACATAATAGTGGCACACAACAATTACGCCAAGGTTATCAACATGGTCCAGAATATCAACCAATGCCATTGGCAGCAATGGGTAATAATAATCCTCCTGGTAGTGGTATGTGGGGTTCTCCAGGATGTCCTAAGCCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAAGTGATTGCATCCGGTTTGGAGATCCCAAGCACCGTAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAGCAGAATATGGTTGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGCATCAATCCTTTAGGTGGTAATCCTAAGCAGCACTCAAAAGAAACATGGGATCAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCAGTAATGGCTACTGTGTGCAATTATGAAGCAGGTATTGTGATTAAGAATTTGTGCTTCAAAGATCTAGCTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATCCTCCTTCCGGTTGGCAACCACTTAGCATTGCTCTACCTGAGACAAGCCCTGATCCAGGGGTTGTAGCTGGAGTATAA 1881 0.4503 MGGDGATANAEAQYASAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYRGPVSISAYGDTATRIPPSVQHALSSTGISLHHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRKYNILLAQPQKASAPLVAAAKNVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQIPVTSTSQMQQQVESHSEVHAGNSKFPNGGRGFDARFQGKPNWRNPSQSNAPRAMNPLPPGPHDNRNRNNINSYRPGNFNPNVPLSGSATNYVHGNSNLQGNHQVPYSQPLRPNNFPLQPPFAPSNSYTPNPHTFAPPTVPPRTGGPNFNSGPHTNVPDIGNLNISGYPNSVHNPPPTIQQRNGDLKQNPNSSAPHLLRSIDEKNGHVAHNSGTQQLRQGYQHGPEYQPMPLAAMGNNNPPGSGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANISDCIRFGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCINPLGGNPKQHSKETWDQIEKFLTTPAGRSAVMATVCNYEAGIVIKNLCFKDLALGDVLQILNMLITHKKWIAHPPSGWQPLSIALPETSPDPGVVAGV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02947 626 CDD PIN_limkain_b1_N_like 18 143 - -
Viun1g02947 626 Gene3D - 9 162 - -
Viun1g02947 626 MobiDBLite consensus disorder prediction 412 441 - -
Viun1g02947 626 Pfam NYN domain 18 156 IPR021139 GO:0004540
Viun1g02947 626 MobiDBLite consensus disorder prediction 171 194 - -
Viun1g02947 626 MobiDBLite consensus disorder prediction 306 320 - -
Viun1g02947 626 MobiDBLite consensus disorder prediction 338 390 - -
Viun1g02947 626 MobiDBLite consensus disorder prediction 209 390 - -
Viun1g02947 626 PANTHER LIMKAIN B LKAP 13 506 IPR024768 GO:0005777|GO:0010468
Viun1g02947 626 MobiDBLite consensus disorder prediction 256 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02947 Viun-Chr1 38250185 38254438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02947 8 218 C2H2 Transcription Factor Family AT5G61190 64.929 5.50e-80 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02947 - - gmx:100794608 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02947 1 38250185 38254438 Viun1g02947 1 38250185 38254438 ECH