Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02942 ATGGACTATCGATGGACTAATGGTAGGCAGGATACAGGTGGCCGTGACAGGAGGCAATCTAAAAAGGAACAGGCATATCATGACTCTCTTGTTGAGGATTTGTCAGATGATTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCACTGAGCCAATTAAATCTGGGATTAGAGATCCAAGACTGGGAGTTGGTAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGAGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAAGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAACAAGAGTCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCTACTGCACTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCATCTAAAGATAACATTTGGTACCATGAAACAAAATGTTGCAAAGAAGCAAAGTGCCCCGATCTCCTCTATATTTAG 879 0.4118 MDYRWTNGRQDTGGRDRRQSKKEQAYHDSLVEDLSDDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSGTVSSESRTATALTDQEQRNTLKFGFSSKDNIWYHETKCCKEAKCPDLLYI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02942 292 MobiDBLite consensus disorder prediction 9 25 - -
Viun1g02942 292 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Viun1g02942 292 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 271 - -
Viun1g02942 292 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Viun1g02942 292 MobiDBLite consensus disorder prediction 227 255 - -
Viun1g02942 292 MobiDBLite consensus disorder prediction 194 222 - -
Viun1g02942 292 SMART G-patch_5 64 109 IPR000467 GO:0003676
Viun1g02942 292 SUPERFAMILY beta-beta-alpha zinc fingers 144 196 IPR036236 -
Viun1g02942 292 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Viun1g02942 292 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Viun1g02942 292 MobiDBLite consensus disorder prediction 1 25 - -
Viun1g02942 292 MobiDBLite consensus disorder prediction 194 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02942 Viun-Chr1 38230368 38234126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02942 1 267 C2H2 Transcription Factor Family AT5G26610 66.667 1.89e-118 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02942 - - gmx:100793206 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02942 1 38230368 38234126 Viun1g02942 1 38230368 38234126 ECH