Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02941 ATGGACTATCGATGGACTAATGGTAGGCAGGATACAGGTGGCCGTGACAGGAGGCAATCTAAAAAGGAACAGGCATATCATGACTCTCTTGTTGAGGATTTGTCAGATGATTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCACTGAGCCAATTAAATCTGGGATTAGAGATCCAAGACTGGGAGTTGGTAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGAGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAAGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAACAAGAGTCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCTACTGCACTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCATCTAAAGGCAGTGCTTCCAAGATAACATTTGGTACCATGAAACAAAATGTTGCAAAGAAGCAAAGTGCCCCGATCTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA 915 0.4109 MDYRWTNGRQDTGGRDRRQSKKEQAYHDSLVEDLSDDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSGTVSSESRTATALTDQEQRNTLKFGFSSKGSASKITFGTMKQNVAKKQSAPISSIFSNDSDEE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02941 304 MobiDBLite consensus disorder prediction 227 298 - -
Viun1g02941 304 MobiDBLite consensus disorder prediction 194 304 - -
Viun1g02941 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
Viun1g02941 304 MobiDBLite consensus disorder prediction 9 25 - -
Viun1g02941 304 SUPERFAMILY beta-beta-alpha zinc fingers 144 196 IPR036236 -
Viun1g02941 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Viun1g02941 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Viun1g02941 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Viun1g02941 304 MobiDBLite consensus disorder prediction 194 222 - -
Viun1g02941 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
Viun1g02941 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Viun1g02941 304 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02941 Viun-Chr1 38230368 38234126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02941 1 304 C2H2 Transcription Factor Family AT5G26610 63.192 1.47e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02941 - - gmx:100793206 527.709