Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02938 ATGAACAACAACACTTATGCAGCGGATCAATCTTCTGCACCCAACAATGATTTGTTTGAGCTCGTTTGGGAAAAGGGCCAGATTTCAGTGCAAGGTCAATCCTGTAAAGCTCGAAAGACTCCAAATTGTAAAACTTTGCCATCTCATTGCTCGCCATCTCACACTCCTCTAGGAGGATATGCTAATGATAATAATGCTACCATCACAAGGATGGGGAAGTTTGGCAGTTTAGGAGCTGAATTGAATGAAATCAAAAGGGTGGTCCCTTCGGGTGAAGTGTATTTCAGTGAAGAAGAAGAAGAAGACATGGTGATGCCTTGGTTGAATTATGGAATAGATGACTCTTTGCAACATGGATATAGTTCTGATTTTTTCAATGAACTATCTGGGGTCACCATGAATGAGCCATCAGCATCAAATGGATTTTCTTTGTTAGACAGAAGAAATAGTTGTAGTAAGGTATTTAGGGACACTCATAAAAACACCCCATTTGCATCTGTTAGATCCAAGATAATAGATATAGCTGAAAATAATACAAATAATGTTCCATCTCCCTCAAGTGGTTTTTCTAGCTTAAAGATGGAGAAGCAAGGTCCAGTTGCGTGTAGCAGTAGTTCCACCATGATGAATTTTTCCCTCTTTGCAAAGCCTGCTGCTATTGTCAAAGCTAACCTTGAGAACATTGGTTTGGCATCAAGATCAAGAAGTGTGGGAATAAAGATAAAAGGTGCTGCTGCAACTGTTGCAGCTAATCCTTCTGAATCAACAAAAGTTGAATTATTCGGAGAGTGTCCAAAAAAAACAGTCACACAAAGTCATCATCACGTTACGGAGCCAAAACATCTTGAGCAGGATGGTGGTGTTTCTACAAAGTGTGATCCTTCTTGCAAAGATGTGTGCAGGGTTGATGACACTTCAAATGTAGTCGTTGGAGAAAGTGTGAACAAAGGAAAGGAAGCTGTTGAAAAAAATGCAGAGCCAGCTGTAGTATCCTCCTCTGTTTGCTCTGGCAATGGCGCAGAGAGGGGTTTGAAGGATCCAAATCAAATTTTGAAGACAAAAAGCACAGACACCGACGACTTTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTAGAAAAGGAGGTTCCTGCACCGAGAATTGGAGCCAAGAGACACCGTTCAGCTGAAGTGCATAATCTCTCTGAAAGGAGAAGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAATCCCAAATTGCAATAAGGCGGATAAAGCTTCGATGTTGGATGAGGCGATAGAGTATCTGAAAACACTTCAACTCCAACTTCAAATAATGTCAATGGGAAGCGGTTTTTACATGCCTGGTATGATGTTACCTCCGGGAATACAACAGATGCACGCACCACATATGGGTCCATTTTCTCCTGTAGGTGTTGGCATGCAAATGAGGTTAGGAGTGGGTTGTGGCATGGGCATGGTGAATGGTAATGATGAGTGTTCTGGATTTCCAATGCTTCATGTGCCCCAAATGCAAGGAACAAAACTTCCCACAGCACATGCACCTGCTTCCACTGCTTTACATGGGATGCCAAATGCTCAAGTGTTTGGGATGCCAATGCCAATGCAAATGCCACATGCTCCCATATTTTCATTTCCAGGAGAATCCTTTATGAAAGCATCAACTTTAGGACCAAATGCCTCTGGAACATCAGCACTTACGGAAAATGTTGGTTCGGTTTCAGCCTGTAACTTAAAGGATCCGATGCCACATGTGAACTCACAAGATGCACAAAACACCGACAAACCAGATGTCAACACAGGTTTGTGTCGTAACATTGTGTAA 1845 0.4217 MNNNTYAADQSSAPNNDLFELVWEKGQISVQGQSCKARKTPNCKTLPSHCSPSHTPLGGYANDNNATITRMGKFGSLGAELNEIKRVVPSGEVYFSEEEEEDMVMPWLNYGIDDSLQHGYSSDFFNELSGVTMNEPSASNGFSLLDRRNSCSKVFRDTHKNTPFASVRSKIIDIAENNTNNVPSPSSGFSSLKMEKQGPVACSSSSTMMNFSLFAKPAAIVKANLENIGLASRSRSVGIKIKGAAATVAANPSESTKVELFGECPKKTVTQSHHHVTEPKHLEQDGGVSTKCDPSCKDVCRVDDTSNVVVGESVNKGKEAVEKNAEPAVVSSSVCSGNGAERGLKDPNQILKTKSTDTDDFESQSEDVEEESVGVEKEVPAPRIGAKRHRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGSGFYMPGMMLPPGIQQMHAPHMGPFSPVGVGMQMRLGVGCGMGMVNGNDECSGFPMLHVPQMQGTKLPTAHAPASTALHGMPNAQVFGMPMPMQMPHAPIFSFPGESFMKASTLGPNASGTSALTENVGSVSACNLKDPMPHVNSQDAQNTDKPDVNTGLCRNIV 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02938 614 MobiDBLite consensus disorder prediction 588 614 - -
Viun1g02938 614 PANTHER TRANSCRIPTION FACTOR PIF3 3 602 IPR044273 GO:0003700|GO:0006355
Viun1g02938 614 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 450 IPR036638 GO:0046983
Viun1g02938 614 MobiDBLite consensus disorder prediction 332 378 - -
Viun1g02938 614 CDD bHLH_AtPIF_like 390 452 IPR047265 -
Viun1g02938 614 MobiDBLite consensus disorder prediction 271 291 - -
Viun1g02938 614 SMART finulus 396 445 IPR011598 GO:0046983
Viun1g02938 614 Pfam Helix-loop-helix DNA-binding domain 394 440 IPR011598 GO:0046983
Viun1g02938 614 Gene3D - 385 447 IPR036638 GO:0046983
Viun1g02938 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 439 IPR011598 GO:0046983
Viun1g02938 614 MobiDBLite consensus disorder prediction 591 606 - -
Viun1g02938 614 MobiDBLite consensus disorder prediction 271 287 - -
Viun1g02938 614 FunFam Basic helix-loop-helix transcription factor 385 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02938 Viun-Chr1 38191742 38195537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02938 12 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.307 2.32e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g02938 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02938 K12126 - gmx:102659557 749.969