Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02931 ATGAATTTTACTAGAGCTTTGACTGCAACAGCATTTAGGCACTGGACAGGATCAAATTTTGCATCCACCTTTGCTGCACAATCTGTTTATGCATCAGCGAAATGCGTGACAGATTTCATAAACCAATCATCTCAGGGGGTGGCTGGTTTTGGCAGTGAGCATAAAGAATGTGGAATACGGAGCTTCCATGCTAGTTCACAAGTCTGGGCAAGAAGTGATGAACCATTAGGTCTGAAGACCCCAAAAAGGGTGAAATATGCGAGAAGGGATGGTAGAAACCAGCCAATTGTCCGTCCTAATGTCTCAGCTAACAAATCAAATCCTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTCGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGTATGGATGTTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCTGCCGAAGGTGCTGAAATTTTACCTCGTCCTGCAGTTGTAACGGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCAGGAGCGTCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTTCTGGTTGTTGCTGCTGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTGCAGCTTGCTTCCGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAGGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAAGCCTTACTACTTCAGGCGGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAGGGACGGGGTCCATTAGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTTGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATACGGCAGGGAAGTTAACTCAACGAGCAACGCCTGCTATGCCTGTTGAGATCGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAAGAAATATGAGGAGAACAGGCTAAGGAATAAGATGATACAGGACAAACCAACTACTTCAGATGATTCCATGGAGGTTCCACTGAGGGTTGAAATGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTCACTGATGCATTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTCCATGTTGGCGTTGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAACTCAGGCAGCAACTCGTGCCAGTATCAAGATAATTCTGCACCGTGTAATTTACCACCTTTTGGAGGACATAGGGAATCTGATAATAGAGAAAGCCCCTGGAACTTCTGAAACCCAGGTTGCTGGACAGGCAGAAGTGCTTAACATCTTTGAAATCAAAGGGAGCAAGTCGAAGGGCCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTCTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGGGAAGTGGTGTTTGAAGGAAATTGTTCGTCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAAAAAGGAAGTGAGTGTGGACTGGTAATTAGCAATTGGTATGATTTCCAGGTTGGAGATGTTATTCAGTGCTTGGAACAAGTTGTAAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2109 0.4481 MNFTRALTATAFRHWTGSNFASTFAAQSVYASAKCVTDFINQSSQGVAGFGSEHKECGIRSFHASSQVWARSDEPLGLKTPKRVKYARRDGRNQPIVRPNVSANKSNPDKTVEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDTAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQKKYEENRLRNKMIQDKPTTSDDSMEVPLRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALTQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGSVTRSATMRLLRSGEVVFEGNCSSLKREKQDVDTVKKGSECGLVISNWYDFQVGDVIQCLEQVVRKPKFIKSESGAVRIEC 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02931 702 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 482 590 IPR036925 -
Viun1g02931 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 372 IPR027417 -
Viun1g02931 702 SUPERFAMILY Translation proteins 355 437 IPR009000 -
Viun1g02931 702 Gene3D - 179 353 IPR027417 -
Viun1g02931 702 Gene3D Translation factors 585 687 - -
Viun1g02931 702 NCBIfam small GTP-binding protein domain 184 336 IPR005225 GO:0005525
Viun1g02931 702 SUPERFAMILY Translation proteins 586 687 IPR009000 -
Viun1g02931 702 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 181 351 IPR000795 GO:0003924|GO:0005525
Viun1g02931 702 Pfam Translation-initiation factor 2 481 573 IPR023115 -
Viun1g02931 702 FunFam Translation initiation factor IF-2 178 353 - -
Viun1g02931 702 CDD IF2_mtIF2_II 357 452 IPR044145 -
Viun1g02931 702 NCBIfam translation initiation factor IF-2 109 685 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g02931 702 CDD mtIF2_IVc 591 680 - -
Viun1g02931 702 CDD IF2_eIF5B 185 348 - -
Viun1g02931 702 Hamap Translation initiation factor IF-2 [infB]. 2 688 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g02931 702 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 101 696 IPR015760 -
Viun1g02931 702 Pfam Elongation factor Tu GTP binding domain 186 342 IPR000795 GO:0003924|GO:0005525
Viun1g02931 702 Gene3D - 480 583 IPR036925 -
Viun1g02931 702 FunFam Translation initiation factor IF-2 480 585 - -
Viun1g02931 702 Gene3D Translation factors 354 470 - -
Viun1g02931 702 FunFam Translation initiation factor IF-2 586 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02931 Viun-Chr1 38101305 38107585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02931 182 571 Eukaryotic Initiation Factors Gene Family AT1G21160 27.451 8.12e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02931 K02519 - gmx:100781314 1222.22