Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02930 ATGGCGTGGCGCGAGCTTGGAAAGAAGACAATATATATGAATTTTACTAGAGCTTTGACTGCAACAGCATTTAGGCACTGGACAGGATCAAATTTTGCATCCACCTTTGCTGCACAATCTGTTTATGCATCAGCGAAATGCGTGACAGATTTCATAAACCAATCATCTCAGGGGGTGGCTGGTTTTGGCAGTGAGCATAAAGAATGTGGAATACGGAGCTTCCATGCTAGTTCACAAGTCTGGGCAAGAAGTGATGAACCATTAGGTCTGAAGACCCCAAAAAGGGTGAAATATGCGAGAAGGGATGGTAGAAACCAGCCAATTGTCCGTCCTAATGTCTCAGCTAACAAATCAAATCCTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTCGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGTATGGATGTTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCTGCCGAAGGTGCTGAAATTTTACCTCGTCCTGCAGTTGTAACGGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCAGGAGCGTCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTTCTGGTTGTTGCTGCTGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTGCAGCTTGCTTCCGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAGGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAAGCCTTACTACTTCAGGCGGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAGGGACGGGGTCCATTAGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTTGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATACGGCAGGGAAGTTAACTCAACGAGCAACGCCTGCTATGCCTGTTGAGATCGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAAGAAATATGAGGAGAACAGGCTAAGGAATAAGATGATACAGGACAAACCAACTACTTCAGATGATTCCATGGAGGTTCCACTGAGGGTTGAAATGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTCACTGATGCATTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTCCATGTTGGCGTTGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAACTCAGGCAGCAACTCGTGCCAGTATCAAGATAATTCTGCACCGTGTAATTTACCACCTTTTGGAGGACATAGGGAATCTGATAATAGAGAAAGCCCCTGGAACTTCTGAAACCCAGGTTGCTGGACAGGCAGAAGTGCTTAACATCTTTGAAATCAAAGGGAGCAAGTCGAAGGGCCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTCTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGGGAAGTGGTGTTTGAAGGAAATTGTTCGTCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAAAAAGGAAGTGAGTGTGGACTGGTAATTAGCAATTGGTATGATTTCCAGGTTGGAGATGTTATTCAGTGCTTGGAACAAGTTGTAAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2145 0.4485 MAWRELGKKTIYMNFTRALTATAFRHWTGSNFASTFAAQSVYASAKCVTDFINQSSQGVAGFGSEHKECGIRSFHASSQVWARSDEPLGLKTPKRVKYARRDGRNQPIVRPNVSANKSNPDKTVEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDTAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQKKYEENRLRNKMIQDKPTTSDDSMEVPLRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALTQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGSVTRSATMRLLRSGEVVFEGNCSSLKREKQDVDTVKKGSECGLVISNWYDFQVGDVIQCLEQVVRKPKFIKSESGAVRIEC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02930 714 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 193 363 IPR000795 GO:0003924|GO:0005525
Viun1g02930 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 384 IPR027417 -
Viun1g02930 714 NCBIfam small GTP-binding protein domain 196 348 IPR005225 GO:0005525
Viun1g02930 714 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 113 708 IPR015760 -
Viun1g02930 714 NCBIfam translation initiation factor IF-2 121 697 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g02930 714 FunFam Translation initiation factor IF-2 492 597 - -
Viun1g02930 714 CDD IF2_mtIF2_II 369 464 IPR044145 -
Viun1g02930 714 Gene3D Translation factors 597 699 - -
Viun1g02930 714 SUPERFAMILY Translation proteins 367 449 IPR009000 -
Viun1g02930 714 CDD mtIF2_IVc 603 692 - -
Viun1g02930 714 Gene3D - 492 595 IPR036925 -
Viun1g02930 714 Pfam Translation-initiation factor 2 493 585 IPR023115 -
Viun1g02930 714 FunFam Translation initiation factor IF-2 190 365 - -
Viun1g02930 714 Gene3D - 191 365 IPR027417 -
Viun1g02930 714 Gene3D Translation factors 366 482 - -
Viun1g02930 714 CDD IF2_eIF5B 197 360 - -
Viun1g02930 714 SUPERFAMILY Translation proteins 598 699 IPR009000 -
Viun1g02930 714 Pfam Elongation factor Tu GTP binding domain 198 354 IPR000795 GO:0003924|GO:0005525
Viun1g02930 714 FunFam Translation initiation factor IF-2 598 701 - -
Viun1g02930 714 Hamap Translation initiation factor IF-2 [infB]. 4 700 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Viun1g02930 714 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 494 602 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02930 Viun-Chr1 38101298 38107585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02930 194 583 Eukaryotic Initiation Factors Gene Family AT1G21160 27.451 7.52e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02930 K02519 - gmx:100781314 1245.34