Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02926 ATGGCTTCTCTCATAGGCGTTTCTTCCATTTACCAAACGCCTGCGCTCGAACTCTACCAGAGGCCAAACGCTACTTCCACTTCCTCCGTTAGGTTGCAATCTTTGGACTCCAAGTCCCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCCCTGGGCCCACCTTCAAAACGGGCCTCAAGCCCACTCCCACTTTCCTCCCCTCCGCCATCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAATTCGAACACGCCTCCGATTCTCACTCCGCCGAACCCCCCAACTCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCAAGAGCCGTGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACGCTAGCGTTCGGAATTCCAGTTATTAAAGGCCTCACTGAAGTTGAAGATGAGCCTTCTCTCAGGAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCCCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCTCCTTATCTCAGCACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTACTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCAGGGAGAATAATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAATGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAACCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTCGCTGAAGGGATAAAACTTTTTGCTATATCAGCCACTGCCACTTCAAAGCGGACAATTCTCTCTGATCTCGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTATTTACACAGACAAAAAAAGATGCTGATGAAGTATCACTGTCATTAACAAATAGTATAACGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACACCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCGCCAGCTATGGAAGAGGTCTTGGAGTCATCTGCGGAGCAGGTTGTTGCCACACTTGGTGGAGTTCATCCCGAATCTATCCAGTTTTTCACCCCAACTGCACAAAAACTGATCGAAGAACAAGGAACAACTGCCCTTGCCGCTGCCCTTGCACAACTTAGTGGATTTTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGACTACGTTGCAACTAATTCGGGATTCGGAGAATAGTAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTTTTCATCAGCTGCCGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTGCTTACTAAGGACATACCACCTGGTAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGACGATGGGCCTCCAAGTGATTTCTATGGAAGGTTCTCTGACAGAGAACGTGGTAACCGAAGAGGATCTACTTCTAGGGGAGGTTTTAGTTCTAGGGGAGGTGGTTTTGCTTCTAGGGACCGGAGAGGTTTTAAATCCTCACGGGGATGGGATGGGGAAGACTCTGATGATGACGACTTCAGTGATCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAATCTGGCGGCAATAGCTGGTCTCGAGCAGGAGGTAAAAGTGGTGGAGATGATTGGCTAATTGGGGGTAGACGATCAAGCCGGCCTTCATCATCAGACAGATTCGGAGGGGCCTGTTTCAATTGTGGGGAATCTGGTCATCGTGCATCAGATTGTCCAAACTCTTCAAACCGGCGAAGCTTTTTTTAA 2322 0.4793 MASLIGVSSIYQTPALELYQRPNATSTSSVRLQSLDSKSHFNNLLRAHRHSPGPTFKTGLKPTPTFLPSAIATPNSSLLSEEAFKGLGRHFDQFEHASDSHSAEPPNSDELDISKLDLPSRLVDSLKSRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEVEDEPSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLFAISATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLESSAEQVVATLGGVHPESIQFFTPTAQKLIEEQGTTALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLIRDSENSRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLTKDIPPGNTISKITKLPPLQDDGPPSDFYGRFSDRERGNRRGSTSRGGFSSRGGGFASRDRRGFKSSRGWDGEDSDDDDFSDRSSRRGGRNFKSGGNSWSRAGGKSGGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPNSSNRRSFF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02926 773 MobiDBLite consensus disorder prediction 677 691 - -
Viun1g02926 773 FunFam ATP-dependent RNA helicase RhlE 100 322 - -
Viun1g02926 773 FunFam Nucleolar RNA helicase II 341 531 - -
Viun1g02926 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 319 IPR014001 -
Viun1g02926 773 SMART helicmild6 373 453 IPR001650 -
Viun1g02926 773 MobiDBLite consensus disorder prediction 754 773 - -
Viun1g02926 773 Pfam DEAD/DEAH box helicase 135 308 IPR011545 GO:0003676|GO:0005524
Viun1g02926 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 102 686 - -
Viun1g02926 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 474 IPR027417 -
Viun1g02926 773 Gene3D - 112 323 IPR027417 -
Viun1g02926 773 Pfam Zinc knuckle 749 765 IPR001878 GO:0003676|GO:0008270
Viun1g02926 773 CDD SF2_C_DEAD 333 462 - -
Viun1g02926 773 CDD GUCT_Hera 547 626 - -
Viun1g02926 773 MobiDBLite consensus disorder prediction 759 773 - -
Viun1g02926 773 ProSiteProfiles Zinc finger CCHC-type profile. 750 765 IPR001878 GO:0003676|GO:0008270
Viun1g02926 773 Pfam GUCT (NUC152) domain 540 639 IPR012562 GO:0003723|GO:0004386|GO:0005524
Viun1g02926 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 493 IPR001650 -
Viun1g02926 773 Pfam Helicase conserved C-terminal domain 346 453 IPR001650 -
Viun1g02926 773 SMART c2hcfinal6 749 765 IPR001878 GO:0003676|GO:0008270
Viun1g02926 773 Gene3D - 337 531 IPR027417 -
Viun1g02926 773 MobiDBLite consensus disorder prediction 647 661 - -
Viun1g02926 773 SUPERFAMILY Retrovirus zinc finger-like domains 735 769 IPR036875 GO:0003676|GO:0008270
Viun1g02926 773 SMART ultradead3 130 336 IPR014001 -
Viun1g02926 773 Gene3D - 722 771 - -
Viun1g02926 773 CDD DEADc 122 320 - -
Viun1g02926 773 MobiDBLite consensus disorder prediction 623 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02926 Viun-Chr1 38064607 38070708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02926 68 475 Eukaryotic Initiation Factors Gene Family AT1G72730 35.109 2.19e-67 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02926 - - gmx:100789516 1263.44