Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02904 ATGGGAAGACATTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATTACTAAGTACGGTCATGGTTGTTGGAGCTCGGTTCCTAAGCAAGCAGGTTTGCATAGGTGCGGCAAGAGCTGCAGGCTTCGCTGGATCAATTATCTGAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAACCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGATGGTCTCAAATTGCAGCACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTAAAGAAGAAACTGAAGCAAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGTGAGGAGGACAAAACAAGGAGCCAAGAATTTTCCAATGAATTGAACCTCTTGAATTCTGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCCTGCAGCTCTAAGATTAAGACCAAAAACGACACCAACTTGATAACCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTACTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACTGATACTCTCCCAACCAATTCAGACTTCCCAACCAATTCAGACTCCAGCCATTGGTTCAGTCCAACTGCAAGACCCATTGATATAAACTCTGAGTTTACTTCCGATGTTATGTCCATTCTTCCACCTACAACAGCCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCCGTCCCTCCAGAAGATATTTCAGCACCTTCTTTTGCTCTGAATGGACCCAATTACAGGGAACCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTCACAAGTAGCAAGAACAGTGTTCTTTCTTCGTGGGGACTGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGTTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAACTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCCATAATTTCTGGTTCCAAGGAGCAACACCAGTCACAAACTTCTACCATCTTTTCCAAGGACATCCAAAAGCTAACAGCAGCCTTTGGACATATATAA 1233 0.4485 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLHRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGINPVTHKPLSEVENGEEDKTRSQEFSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKIKTKNDTNLITNCSNKDLFLDSYTTTCQPSDLMGNYPLQMTDTLPTNSDFPTNSDSSHWFSPTARPIDINSEFTSDVMSILPPTTASFLPSTSFCYKPSLAVPPEDISAPSFALNGPNYREPSASNNSNGSNTSDGSREFTSSKNSVLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQTRPATHLVPDNTLGSIISGSKEQHQSQTSTIFSKDIQKLTAAFGHI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02904 410 MobiDBLite consensus disorder prediction 130 144 - -
Viun1g02904 410 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun1g02904 410 FunFam Myb transcription factor 11 67 - -
Viun1g02904 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun1g02904 410 MobiDBLite consensus disorder prediction 145 164 - -
Viun1g02904 410 CDD SANT 17 61 IPR001005 -
Viun1g02904 410 FunFam MYB transcription factor 68 140 - -
Viun1g02904 410 MobiDBLite consensus disorder prediction 303 328 - -
Viun1g02904 410 MobiDBLite consensus disorder prediction 297 328 - -
Viun1g02904 410 Gene3D - 11 67 - -
Viun1g02904 410 MobiDBLite consensus disorder prediction 122 164 - -
Viun1g02904 410 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun1g02904 410 Gene3D - 68 144 - -
Viun1g02904 410 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun1g02904 410 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun1g02904 410 CDD SANT 69 109 IPR001005 -
Viun1g02904 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun1g02904 410 MobiDBLite consensus disorder prediction 223 242 - -
Viun1g02904 410 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun1g02904 410 PANTHER MYB DOMAIN PROTEIN 55 1 325 - -
Viun1g02904 410 SMART sant 13 63 IPR001005 -
Viun1g02904 410 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02904 Viun-Chr1 37947389 37949145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02904 1 156 MYB Transcription Factor Family AT4G01680 83.333 6.25e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g02904 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02904 K09422 - gmx:100037467 714.146