Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02902 ATGAATACCACATTCAGTAGTACGTACTATTTATTACCAATTCCTCTCAGTAGAGCCATACATTCATTCATTCATTCATTCCCTCACACCCCAACATTTTGCACCCTACAACAAACCACTGCAATCCTTCACAATCTCAATTGTTTAGCCTCGTTATTTTCATTCAATCGAATGATTCAGGAGATGCCTGACTCCACTCGCTCGGCTATGACAAGAACCTCCTACTCCATTTATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGCGAGGTTGTTGTACGAGGAGGTTCATCAAATAGATCACGAAAGACTAACGAGGAAAGAGTATACCAAGATGTCAGCATAAAAAGAACAAGATTGAACCCTTTATACTCACTTGAAGATCACTTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCGTATCAAAGCAATGCCCAGGATTCGTGTCATTCCACCCAAAACAAGAACTCCTGCAAGCTCAACGAGGAATTTGAAAACTTATTAAGACCAGCAAAGGACTCTAAGACCGTTGCCCCAGGACACGGTCTCTTACAATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAGACACCACCACCACCAAACACACGGAACATGGGGTTTGATCAAAGAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCAGTGTTTCTCAAACCCAGTACTTGTCATGGAAGCAGTACAACTCAGCAGACAAAAAATCATTCATCTCCAGCGAGAGTGGAGGGGGTTGAAGCGCGTAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCGAAAGCAAACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGCTCTTGAAATTCACAGACACCAAGGTCAACTACGTTATGACCAAACCTCAGGCGCAGAAGCACTTAGAGCCAAGGAAAAAGCTTATAACAATAGTAACACTCTCTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACGTTGGTATCAGGAAAAATGAGGACACCGACGACTCAACATATTTAAGTGATAATGACGAAGAGCCTGAAAATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGAAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTAGACAAAGCATCAATGCTTGACGATGCCATAGACTATCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGTCTCACATGAACGGAACACATTTACCACAGTTGGTGGGAGCTGGAATGGGATTCCGGCCACCGCAGCTTCCGGTTCCACCACTTTCTGCTATCACAGACACCAGACTTCATCACATGTATGGTTTCCCCAACCAAATACCAACGATGGCAATGCCTCACGCACCTTTCTTCCCCATCATCGGAAATTCTCCCACACAACCACCACACTTGGCTGCCACCACCGCACCTAAATCTCTTCAGGTCTCACTCCCCACCAACGTGGACCCTCTGGAAAATGCAGCAAATCAAGTGCAGAATCCAGTGTCCTGTCATCCCCACGCCATCAGTACTCCTTTCATTTTTCCACAAAAGTAG 1743 0.4429 MNTTFSSTYYLLPIPLSRAIHSFIHSFPHTPTFCTLQQTTAILHNLNCLASLFSFNRMIQEMPDSTRSAMTRTSYSIYDNDFLELVWENGEVVVRGGSSNRSRKTNEERVYQDVSIKRTRLNPLYSLEDHFSPLKESDMSSSYQSNAQDSCHSTQNKNSCKLNEEFENLLRPAKDSKTVAPGHGLLQSPLKKQRTDSTQTPPPPNTRNMGFDQRTAKVNFSNFSIPAVFLKPSTCHGSSTTQQTKNHSSPARVEGVEARKVEKSTKESQGFRKQTSLTVERSAKPPPPLDEHSEAIALEIHRHQGQLRYDQTSGAEALRAKEKAYNNSNTLCKEPFLASSVCSLGASNDPNVGIRKNEDTDDSTYLSDNDEEPENMVKQDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAASHMNGTHLPQLVGAGMGFRPPQLPVPPLSAITDTRLHHMYGFPNQIPTMAMPHAPFFPIIGNSPTQPPHLAATTAPKSLQVSLPTNVDPLENAANQVQNPVSCHPHAISTPFIFPQK 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02902 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 439 IPR011598 GO:0046983
Viun1g02902 580 MobiDBLite consensus disorder prediction 136 156 - -
Viun1g02902 580 MobiDBLite consensus disorder prediction 234 250 - -
Viun1g02902 580 Pfam Helix-loop-helix DNA-binding domain 394 439 IPR011598 GO:0046983
Viun1g02902 580 SMART finulus 396 445 IPR011598 GO:0046983
Viun1g02902 580 MobiDBLite consensus disorder prediction 371 399 - -
Viun1g02902 580 CDD bHLH_AtPIF_like 390 452 IPR047265 -
Viun1g02902 580 MobiDBLite consensus disorder prediction 234 290 - -
Viun1g02902 580 MobiDBLite consensus disorder prediction 348 399 - -
Viun1g02902 580 FunFam Basic helix-loop-helix transcription factor 385 448 - -
Viun1g02902 580 PANTHER TRANSCRIPTION FACTOR PIF3 52 562 IPR044273 GO:0003700|GO:0006355
Viun1g02902 580 MobiDBLite consensus disorder prediction 190 210 - -
Viun1g02902 580 Gene3D - 386 447 IPR036638 GO:0046983
Viun1g02902 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 454 IPR036638 GO:0046983
Viun1g02902 580 MobiDBLite consensus disorder prediction 252 269 - -
Viun1g02902 580 MobiDBLite consensus disorder prediction 173 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02902 Viun-Chr1 37915889 37918893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02902 345 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 53.279 1.30e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g02902 HLH 5.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02902 K12126 - gmx:100804665 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02902 1 37915889 37918893 Viun7g01901 7 24154246 24156101 PCT