Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02901 ATGGGAAAGCACTCTAGTTCTTCTTCCTCCTCCATCAGCAGCAGCAGCAACCACCACCACCTTCTCATTTCCACTGCATCATCTCTCACACAAGAGCTTCCCACCGATCTCAGCCTTGGACTCAGCATTTCCGCCGCTCATCGTGGTGGCTCTTCTCTTTCAAGGGGGCATTGGCGACAACCACAGCACCCTCTGGTGAACATTTCACAAGGTGCTGAAGTGAATGATTGCAACGACCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATATACTTGCTCATGGAGGCTATTATGAGTTAGTGAGGACTCTTGAACACATGTTCGACACTACCATTCTTTGGGGAACAGAGATGAATGGAGTGCAACCTGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGGGATTTGGTGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTGAAGAGATTGAAGATAACAAGGGTAGACACATTTGGGTGTTAA 528 0.4678 MGKHSSSSSSSISSSSNHHHLLISTASSLTQELPTDLSLGLSISAAHRGGSSLSRGHWRQPQHPLVNISQGAEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02901 175 Pfam AUX/IAA family 75 169 IPR033389 -
Viun1g02901 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Viun1g02901 175 SUPERFAMILY CAD & PB1 domains 77 167 - -
Viun1g02901 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 75 170 IPR003311 GO:0005634|GO:0006355
Viun1g02901 175 Gene3D - 76 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02901 Viun-Chr1 37903381 37904668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02901 86 167 B3 DNA Binding Superfamily AT4G23980 39.024 2.36e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun1g02901 AUX_IAA 2.2e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02901 K14484 - gmx:100783140 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02901 1 37903381 37904668 Viun7g01898 7 24122067 24123395 PCT