Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02893 ATGTCTGATATGATGAGGCAGGGGAATGATGTCCTGCATGATGAAGAGCTTAAACATGATGAGACAACGGCACCAGAGAGCACCACAAACGGGGAAAAGAAAGAAAAGAGACAACAAAAGGCAAAGGCTGAAAGGGTTCCATATCACAGGCTGTTCTTATTTGCAGACTCCACTGACATCATTTTGATGGTTGTTGGCACCATTGGAGCCATTGGAAATGGCCTTGGGATGCCTCTCATGGCATTTCTTTTCGGGGAACTCATTGATAGTTTTGGCAATAACCAGTTTAGCCCCAACGTTGTCAAACAAGTTTCCAAGGTTTGCTTGAGATTTGTGTACTTAGGAATAGGTACCGGCGTGGCTGCTTTCCTCCAGGTGACTTGCTGGACGGTCACAGGGGAAAGACAGGCTACAAGAATAAGGGGCTTGTATTTGAAAGCTATACTAAGACAGGATATTGCTTTCTTTGATAAGGAAACTAACACTGGAGAGGTGATAGGGAGAATGTCAGGTGACACTGTTCTCATACAAGATGCTATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTAGTAGCAACCTTTTTTGGGGGCTTTGTGATTGCATTTATCAAAGGGTGGCTTCTAACTGTTGTCATGTTATCCGTTGTTCCGCTTGTTGCTGCTGCTGCCGCTGCTATGGCCCTTATCATAGGAATGATGGCAAGCAGAGGCCAAAACGCGTATGCGAAAGCTTCACAAGTAGTTGAAGAAACAATAGGTTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTGTCCACTTACAAGAAATTTCTTGCAGATGCTTATAAATCAGGAGTTCATGAAGGTTTAGTAGGTGGAATAGGTTTTGCCATGGTTTTGTTCGTTATGTTCTGTGGTTATGGCTTGTCTGTATGGTTTGGCGCAAAAATGATAATGGAAAGAGGATATGGTGCGGGTGCGGTGGTTAATGTGTTTGTTGCTGTGTTAAATGCTTCCATGTCTCTGGGTCAGGCATCTCCTTCTATGAATGCTTTTGCTGAAGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATAGAGAGAAAGCCAGAGATAGATGCTTATGACACAAATGGAAAAAGGCTAGAGGATATTCATGGTGAAATCCATTTGAGGGATGTTTATTTCAGCTATCCCGCGAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATAGCTAGTGGCACCACAGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAATCTACAGTTATCAGTTTAATTGAAAGATTCTACGATCCACAGGCTGGTGAAGTTCTTATCGATGGCACTAATGTGAAAGAATTTGAGCTCAGGTGGATCAGAGGAAAAATTGGCCTTGTCAGTCAGGAGCCAGTGTTATTTGCATCTAGCATTAAGGATAATATTGCGTATGGAAAAGATGGAGCAACAGTTGAAGAGATAAGAGGTGCAGCTGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACGGGGATTGGACACAATGGTTGGTGAGAATGGAACTCAATTATCCGGTGGACAGAAGCAGCGCATTGCAATTGCAAGAGCAATTCTGAAAGATCCAAGAATTTTACTTTTAGATGAAGCAACAAGTGCACTTGACGCGGAGTCAGAAAGAATAGTGCAAGAAGCTCTAGACAGAATCATGGTCAACAGAACTACTGTCATTGTCGCACATCGCCTGAGAACGGTGAGAAATGCTGATATGATTGCAGTAATTCATAGAGGGAAAATGGTTGAACAAGGAAGACACGAAGAATTAACCAAGGATCCTGAGGGAGCATACTCTCAACTTATACGTTTACAAGAAGGAAACCAGGCACCAGAAGAAACAAGAGACAGCCACAACAAGAGGGAACTTTCCTCGGAATCCTTTAAAAAGTTGAGTCAAAGGCTGTCATTTCGAAGATCAGGATCATCTGTGGGGAACAGTAGCCGCCACTCCTTTTCAGTTTCATTTGGTTTGCCTACAGCAATTAGCATCCCTGATCCAGGCCTTGAAAACTCACAGCCTCAAGAAAAATCGCCAGAAATTTCACTCTGGCGCCTTGCTTCCCTCAATAAGTCCGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCAGTAGCAAATGGTGTTATATATCCAATATTTGGCGTGTTGCTCTCCAGAATTATCAAAACATTTTTTAAGCCTTTTCCTGAGATGAAAACGGATTCCCAGTTTTGGGCACTCATGTTTGTGAGCCTTGGAATTGCATCTTTAATAGCAATTCCAGCCAGAAGTTACTTTTTCTCTGTGGCTGGTACTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATCAACATGGAAGTTGGGTGGTTTGATGAGCCTGAGCACTCTAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCAGTGCGCGCCCTTGTTGGTGATGCTCTAGGACTATTGGTTCAAAATATAGCCACAGCATTGACAGGTGTGATCATTGCTTTTGTTGCGAGCTGGCAATTAGCGTTTATTGTTCTTGTTTTGGTTCCCCTTATTGGAATGAATGGCTATATCCAAATGAAATTCATGAAGGGATCCAGCACAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCAGAGGAGAAAGTTATGGAACTATACAGGCAAAAATGTGAAGGTCCCATGAAAACAGGGATTCGACAAGGCTTGATAAGTGGAACAAGTTTTGGTCTTTCATTTTTCTTGCTCTTCAGTGTCTATGCAACCAATTTCTATGCTGGAGCCAGACTTGTGGAAGCTGGCAAGGCATCATTCACAGATGTTTTTCTGGTTTTCTTTGCTTTAACTATGTCATCGGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAAAGCCAAGATAGCAACTGCTTCCATATTTGGAATAATTGACAGGAAATCGAAGATAGACCCTAGTGATGAGGTCGGTAGCACACTGGATAATGTAAAAGGAGAAATACAGATTCGTCATGTAAGTTTTAGGTATCCATCAAGGCCAGATATACAAATTTTTCGAGACTTAAACTTGACCATCCATTCAGGCAAGACTTTGGCTATTGTTGGTGAAAGTGGGAGTGGAAAATCCACGGTGATTGCGTTGTTACAGAGATTCTATGATCCTGATTCTGGTCAAATTACAATTGATGGGGTAGAAATTCAGAATTTAAAACTCAGGTGGTTAAGGCAGCAAATGGGACTTGTAAGCCAAGAGCCAGTTTTGTTCAATGACACCATCCGTGCCAATGTTGCATATGGAAAGGAAGGTAACGCTAATGAAGCAGAAGTCATAACCGCTGCGAAATTGGCCAATGCACATGGCTTTATTAGTGGCTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCAACTGTCTGGTGGGCAGAAGCAAAGGGTGGCCATTGCACGTGCTATGATTAAAAGTCCAAAGATTGTGCTACTTGATGAGGCCACAAGTGCACTAGACGCTGAGTCAGAGAGAGTTGTTCAAGATGCCTTAGATAAAGTGATGGTGAGCAGGACCACTGTGGTTGTGGCTCATCGTTTATCCACAATAAAAAATGCAGATGTGATTGCAGTGGTAAAAAATGGCATTATAGTGGAGAAAGGAAGACATGAAACGCTTGTTAACATCAAGGATGGGTTTTATGCTTCCTTGGTCCAACTTCATACAAGTTCTACAACACCATGA 3852 0.4273 MSDMMRQGNDVLHDEELKHDETTAPESTTNGEKKEKRQQKAKAERVPYHRLFLFADSTDIILMVVGTIGAIGNGLGMPLMAFLFGELIDSFGNNQFSPNVVKQVSKVCLRFVYLGIGTGVAAFLQVTCWTVTGERQATRIRGLYLKAILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLVATFFGGFVIAFIKGWLLTVVMLSVVPLVAAAAAAMALIIGMMASRGQNAYAKASQVVEETIGSIRTVASFTGEKQAVSTYKKFLADAYKSGVHEGLVGGIGFAMVLFVMFCGYGLSVWFGAKMIMERGYGAGAVVNVFVAVLNASMSLGQASPSMNAFAEGQAAAYKMFQTIERKPEIDAYDTNGKRLEDIHGEIHLRDVYFSYPARPEELIFNGFSLHIASGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFELRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATVEEIRGAAELANAAKFIDKLPRGLDTMVGENGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLRTVRNADMIAVIHRGKMVEQGRHEELTKDPEGAYSQLIRLQEGNQAPEETRDSHNKRELSSESFKKLSQRLSFRRSGSSVGNSSRHSFSVSFGLPTAISIPDPGLENSQPQEKSPEISLWRLASLNKSEIPVLLIGCVAAVANGVIYPIFGVLLSRIIKTFFKPFPEMKTDSQFWALMFVSLGIASLIAIPARSYFFSVAGTKLIRRIRLICFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGVIIAFVASWQLAFIVLVLVPLIGMNGYIQMKFMKGSSTDAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRQKCEGPMKTGIRQGLISGTSFGLSFFLLFSVYATNFYAGARLVEAGKASFTDVFLVFFALTMSSVGISQSSSLAPDSNKAKIATASIFGIIDRKSKIDPSDEVGSTLDNVKGEIQIRHVSFRYPSRPDIQIFRDLNLTIHSGKTLAIVGESGSGKSTVIALLQRFYDPDSGQITIDGVEIQNLKLRWLRQQMGLVSQEPVLFNDTIRANVAYGKEGNANEAEVITAAKLANAHGFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAMIKSPKIVLLDEATSALDAESERVVQDALDKVMVSRTTVVVAHRLSTIKNADVIAVVKNGIIVEKGRHETLVNIKDGFYASLVQLHTSSTTP 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02893 1283 Pfam ABC transporter transmembrane region 716 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02893 1283 Pfam ABC transporter transmembrane region 64 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02893 1283 SMART AAA_5 413 605 IPR003593 GO:0016887
Viun1g02893 1283 SMART AAA_5 1065 1258 IPR003593 GO:0016887
Viun1g02893 1283 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524|GO:0016887
Viun1g02893 1283 FunFam ABC transporter B family member 9 1005 1026 - -
Viun1g02893 1283 Pfam ABC transporter 405 553 IPR003439 GO:0005524
Viun1g02893 1283 Gene3D - 1028 1282 IPR027417 -
Viun1g02893 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Viun1g02893 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 63 359 - -
Viun1g02893 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02893 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 622 IPR003439 GO:0005524
Viun1g02893 1283 FunFam ABC transporter B family member 1 696 1004 - -
Viun1g02893 1283 MobiDBLite consensus disorder prediction 8 42 - -
Viun1g02893 1283 SUPERFAMILY ABC transporter transmembrane region 49 370 IPR036640 GO:0005524|GO:0016020
Viun1g02893 1283 MobiDBLite consensus disorder prediction 628 646 - -
Viun1g02893 1283 FunFam ABC transporter B family member 1 1028 1278 - -
Viun1g02893 1283 Gene3D ABC transporter type 1, transmembrane domain 109 1012 IPR036640 GO:0005524|GO:0016020
Viun1g02893 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 624 IPR027417 -
Viun1g02893 1283 MobiDBLite consensus disorder prediction 1 42 - -
Viun1g02893 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 1021 - -
Viun1g02893 1283 CDD ABC_MTABC3_MDL1_MDL2 1038 1276 - -
Viun1g02893 1283 PANTHER ABC TRANSPORTER B FAMILY 26 627 IPR039421 -
Viun1g02893 1283 CDD ABC_MTABC3_MDL1_MDL2 386 624 - -
Viun1g02893 1283 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Viun1g02893 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1031 1276 IPR027417 -
Viun1g02893 1283 FunFam ABC transporter B family member 9 50 383 - -
Viun1g02893 1283 Gene3D - 384 641 IPR027417 -
Viun1g02893 1283 Pfam ABC transporter 1057 1206 IPR003439 GO:0005524
Viun1g02893 1283 MobiDBLite consensus disorder prediction 625 646 - -
Viun1g02893 1283 SUPERFAMILY ABC transporter transmembrane region 703 1022 IPR036640 GO:0005524|GO:0016020
Viun1g02893 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02893 1283 FunFam ABC transporter B family member 1 376 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02893 Viun-Chr1 37842735 37848648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02893 39 1282 Calmodulin-binding Proteins AT2G36910 44.108 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02893 K05658 - gmx:100802547 2150.55