Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02887 ATGTCTGGAAAAATAATTATCTCTGCGGTTTCTCTCATCCTTGTGGTGGGTGTTGCACTCGGCGTTGTGGTTACCGTTAATAAGAAGGGTGATGAATCCTCCATCCAAACCAATCAAAAATCCGTCGAGATTATCTGTCAAAACACCGATGACAAAAACCTCTGCCACAACACTCTCAGCTCCGTTAAGGGTCTTGACACCGCTGACCCTAAGGCTTACATTGCCACGGCAGTAAAAGCCACCATGGATAGTGTGATCAAAGCGTTCAACATGAGTGACAGGCTCTCCACCGAGCATGGAGACACAGACAATGGCACTAAGATGGCCATTGATGATTGCAAGGATTTATTGCAATCTGCCATCCAAAGTCTTCAACTCAGCACTGACATGGTGCAAAATAACAACATCCAAGCTGTACATGACCAAACTGCTGATTTCAAGAACTGGCTTAGTTCAGTTATCTCATACCAGCAGGCGTGCATGGAGGGCTTCGATGATGGCAAAGAAGGTGAGAAGAGTATCAAGGAGCAATTCCAGACAGAGAGCTTAGACAAAGTGCAGAAACTGACTGCCATCACCCTTGATATCGTGACTGGTTTGTCACACATCCTCGAAAAGTTTGGGTTGAAGTTAAACCTTAAACCTGCCTCCCGTCGTCTTCTTAGTATGGATGGGTACCCCACTTGGTTCTCTGCCGCAGACCGCAAGCTCTTGGATCAAATTAAACGTAAAGGATGGAGAGCAAACATCACACCCAATGTCGTAGTTGCCCAGGATGGCTCTGGTCAGTTTAAAACCATTGCCGATGCAATTGCTTCTTACCCCAACGGCTTCCAGGGTAGATATTACATATATGTTAAGGCTGGTGTTTATGATGAATACATCACTGTTCCCAAGACCGCTGTTAATCTTTTCCTATATGGTGATGGCCCTGGGAAGACCATTGTCACTGGTCACAAGAACTTCCGTGATGGAGTTAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCCAGGCTTCATTGCCAAGGCAATGACATTCGAGAACACTGCTGGACCTGACGGACACCAAGCCGTGGCTTTCAGGAACCAGGGAGACATGTCAGCAGTGATTGGCTGCCACATTTTGGGTTACCAAGACACCTTATACGTCCAAACCAACAGGCAATTCTACCGCAATTGTGTTATCTCCGGCACTATTGATTTCATCTTCGGCACCTCACCCACTGTGATCCAACACTCTGTCATCGTCGTCAGGAAGCCCCTTGACAACCAATTAAATACCATTACTGCAGATGGCACATCAGAGAAGAACATGGACACTGGAATTGTTATCCAGGACTGCGACATTGTTGCTGAAGCCGAGCTCTTCCCAGTTAGGTTCCAAATTAAGTCCTACTTGGGTAGGCCATGGAAGCAATACTCAAGGACTGTGGTTATGGAATCCACCATCGGTGACTTCCTTCACCCTGAAGGATGGTGCCCTTGGGCAGGGGAATACTTTGAAGACACTTTGTACTACGCTGAGTACAACAATGCTGGACCCGGTGCTGCAATGGAAGGAAGAATTAAGTGGAAGGGTTATCATGGTCTCATTTCTCGCGAAGAAGCTGCCCAATTCACTGCAGGCCAATTCCTAAAGGCTGGACTTGGCGCTGGAACTGATTGGTTGAAAGCTCTTCGTGTTCCTCATGTCCTTGACTTTGCCAAAGCTTAA 1719 0.4695 MSGKIIISAVSLILVVGVALGVVVTVNKKGDESSIQTNQKSVEIICQNTDDKNLCHNTLSSVKGLDTADPKAYIATAVKATMDSVIKAFNMSDRLSTEHGDTDNGTKMAIDDCKDLLQSAIQSLQLSTDMVQNNNIQAVHDQTADFKNWLSSVISYQQACMEGFDDGKEGEKSIKEQFQTESLDKVQKLTAITLDIVTGLSHILEKFGLKLNLKPASRRLLSMDGYPTWFSAADRKLLDQIKRKGWRANITPNVVVAQDGSGQFKTIADAIASYPNGFQGRYYIYVKAGVYDEYITVPKTAVNLFLYGDGPGKTIVTGHKNFRDGVKTMQTATFANTAPGFIAKAMTFENTAGPDGHQAVAFRNQGDMSAVIGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIVVRKPLDNQLNTITADGTSEKNMDTGIVIQDCDIVAEAELFPVRFQIKSYLGRPWKQYSRTVVMESTIGDFLHPEGWCPWAGEYFEDTLYYAEYNNAGPGAAMEGRIKWKGYHGLISREEAAQFTAGQFLKAGLGAGTDWLKALRVPHVLDFAKA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02887 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Viun1g02887 572 FunFam Pectinesterase 38 201 - -
Viun1g02887 572 Gene3D - 247 568 IPR012334 -
Viun1g02887 572 CDD PMEI-like_3 45 201 - -
Viun1g02887 572 FunFam Pectinesterase 247 569 - -
Viun1g02887 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Viun1g02887 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Viun1g02887 572 PANTHER PECTINESTERASE 14 559 - -
Viun1g02887 572 NCBIfam pectinesterase inhibitor domain 29 200 IPR006501 GO:0004857
Viun1g02887 572 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Viun1g02887 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Viun1g02887 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Viun1g02887 572 SUPERFAMILY Pectin lyase-like 251 551 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02887 Viun-Chr1 37783778 37785708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02887 4 569 Carbohydrate Esterase AT5G49180 39.100 4.34e-134 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02887 K01051 - gmx:100781507 934.095