Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02870 ATGGATGACTGTTGTGCTGTTTGCGCAGAGCCTTTGGAATGGGTCGCCTACGGACCCTGTTTGCACCGGGAGGTGTGCTCCACGTGCGTCGCTCGCCTCCGTTTCATATGCGACAATCGCTGTTGCTGCATCTGCAAGACCGAATGCAACCGCGTATTCGTCACCAAGGCTCTAGGGGATTATACAAAGATGATTAATGATTTTGCTGCCCTTCCTTCGGAGGTAAGGGAGGGCAAGATTGGATCATACTGGTACCATGAGGATACAAATGCATTTTTTGATGATCTGGACCATTACAAGATGATCAAGGCTATGTGTAGACTTTCGTGCAGTGTATGTGACAAGATGGAGGAGCAACCACAGGATGCTGCTTCAAGGCGACGAGATAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATATGTTCCACCGTCACAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGCAGGAAGGTTTTTATATGTGAGCAAAAGCTATATAGCAGAGCACAGTTAAAGCAACACATAAGCACAGGTGATTCTGAGGTTGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCTTGTGTGAATATTGCGGAACCCCATTTTATGGAGACAATGAATTATACTTGCATATGTCTACAGAACATTATACTTGCCATATATGCCAAAGGCAGCATCCAGGGCACTATGACTACTTTAAGAATTATGATGACCTAGAGATTCACTTCCGTCAAGAACACTTCTTATGTGAAGATGAGGCTTGTCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTAGTGAACATGGAGGACGGATGTCACGGTCTAAGCGGAATGCTGCTCTTCAGATTCCAACTAGCTTCAGATACAGACATGGTAATGAACAAGAGCAACGCCGTGGAAGAAATCGTTCTTTTCGTCGTGATTTTACTGAAAATCAACTTTCAATGGCCATTGAAGCTAGTCTAGAAACAGCTAATGCAGAGCAAACATTTCGTGATCAATCGGCATCAGGTAGTGGGCGAGTTGCTGTCGATGATGGGAATGGAGACATTGATTCTCTCATTCAGCCATTTGAATCATTGGCCGCAGCTGGTTCTGAAGCATCTTCAAGATACCTTCAAGCTTTGGGACATAGCTCAAGGAGTGGACCTCTGGAGGATTCTTCCTTTCCACCACTTCCCATAACTTCCAACAATGGCCAGCAAGGATCCAAACAGGAAGTGGAAGGCTCATCTAGTAATTCCATGGCTGCACGACTGCGTCGTCATAACAACAGAACTGTAACAGTTATTAATTCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGTACAACCGCCAAGTAATCCTTCACAATTTCGACAGTCATCAAATAATGCTCTGGGTCTTTCTCGTAATTCTGGGCAGACAAAGAAGGGTGTAATTAACAGTGGACATTCAACATCAACTTATGCTGGTTCTATTCAGTCTACACAAAGAACTTCTCGTGGACAATTACCTGGTGGTTCATCGAGGGACACACGTGACAATGTTAGAATTGTCCACTCTGCATCCGCCCCGAATCTCATGGAGAACAACTCTGTTGAAGCTTCACTATCTGATTTTCCTCCTGTTTCTGCTGCACAAGCGAGCAAGATACCTGCTAGCAGTCATTCTTCATTGAAGGTGGAAAATGTTCAGTCTGCTAACCAGTCCCTGATTGAAAAGATTCGAGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATGTTTAAGGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGAAACGTATCTGGACTATGTGCAGAACTTTGGCTTGTCTCATCTTGTGCCTGAGTTGGCAAGACTGTGCCCTGATACTCAGAAACAGATACAGCTTATTGAGGCTTATAGTGCTAGCTTGCAGAGAGATGCTTTACTGGAAAATAACTTGGTTCAAAGCAGCGCAAGCACCCATCGCAAAGACAGTAATGTAAACAAGAAAGGCAAAGGTAAGTCTATAGATAATAAGGGGAGTAACCCCACAGAGAAATTAGCAGATAACTTTTTAAGCACCGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAGGTGGAGGTGCTATCAAGGGGTGATTACCGAAGTGACAGGGGCAAATTAAAAATCGAACAGCGGACTGATACAAATTCTGAAAGTCAACCTGCGGTAAGGCTTGGTGGGAAGACTGAAACATCAAATGGCAGTTTATCTACTCAAGTTAGAGAGGATGGTGGAGGTGGGAACAAGCAACGCAAGAAAGGTTCAAAGTTCCTAAGAGTGCGACTTGGTGATGGTTCTGCTTCGGCCCTTTTTGATCAACCAGATCCTGGAACAACAGACCGCTCAGAAGTTAACAAGGATGAACCAGGAGGAGGGCTACCTGTGCGTGGTGTTTGGCGAAATGGGGGAGGTCATAAACTTTTTCCCTAA 2508 0.4458 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDNRCCCICKTECNRVFVTKALGDYTKMINDFAALPSEVREGKIGSYWYHEDTNAFFDDLDHYKMIKAMCRLSCSVCDKMEEQPQDAASRRRDKFRNIGQLKGHMFHRHKLHMCSLCLEGRKVFICEQKLYSRAQLKQHISTGDSEVDGSESERGGFMGHPLCEYCGTPFYGDNELYLHMSTEHYTCHICQRQHPGHYDYFKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSEAEMKRHNASEHGGRMSRSKRNAALQIPTSFRYRHGNEQEQRRGRNRSFRRDFTENQLSMAIEASLETANAEQTFRDQSASGSGRVAVDDGNGDIDSLIQPFESLAAAGSEASSRYLQALGHSSRSGPLEDSSFPPLPITSNNGQQGSKQEVEGSSSNSMAARLRRHNNRTVTVINSGNAWPAAGRGLVQPPSNPSQFRQSSNNALGLSRNSGQTKKGVINSGHSTSTYAGSIQSTQRTSRGQLPGGSSRDTRDNVRIVHSASAPNLMENNSVEASLSDFPPVSAAQASKIPASSHSSLKVENVQSANQSLIEKIRGALDFDEERYSMFKDISAQYRQGTIDTETYLDYVQNFGLSHLVPELARLCPDTQKQIQLIEAYSASLQRDALLENNLVQSSASTHRKDSNVNKKGKGKSIDNKGSNPTEKLADNFLSTVHQLQANYKSSEEKVEVLSRGDYRSDRGKLKIEQRTDTNSESQPAVRLGGKTETSNGSLSTQVREDGGGGNKQRKKGSKFLRVRLGDGSASALFDQPDPGTTDRSEVNKDEPGGGLPVRGVWRNGGGHKLFP 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02870 835 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Viun1g02870 835 MobiDBLite consensus disorder prediction 299 320 - -
Viun1g02870 835 MobiDBLite consensus disorder prediction 450 525 - -
Viun1g02870 835 MobiDBLite consensus disorder prediction 740 770 - -
Viun1g02870 835 MobiDBLite consensus disorder prediction 663 694 - -
Viun1g02870 835 MobiDBLite consensus disorder prediction 459 519 - -
Viun1g02870 835 MobiDBLite consensus disorder prediction 304 320 - -
Viun1g02870 835 CDD RING-HC_ZNF598 3 54 IPR041888 -
Viun1g02870 835 PANTHER ZINC FINGER PROTEIN 598 1 743 IPR044288 GO:0061630|GO:0072344
Viun1g02870 835 MobiDBLite consensus disorder prediction 729 835 - -
Viun1g02870 835 SMART c2h2final6 221 251 IPR013087 -
Viun1g02870 835 SMART c2h2final6 108 145 IPR013087 -
Viun1g02870 835 SMART c2h2final6 197 220 IPR013087 -
Viun1g02870 835 SMART c2h2final6 252 281 IPR013087 -
Viun1g02870 835 MobiDBLite consensus disorder prediction 391 430 - -
Viun1g02870 835 ProSitePatterns Zinc finger C2H2 type domain signature. 199 220 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02870 1 834 C2H2 Transcription Factor Family AT3G62240 51.508 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02870 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02870 K22381 - gmx:100780426 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02870 1 37711104 37715648 Viun1g02870 1 37711104 37715648 ECH