Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02855 ATGGATGTTAACAAGAAGAAATCACGGTCCGCAGAAGAGGTGAAGAATAGTGAAGACACTAGAAAAGGTCCATGGAGCGTTGAAGAGGACGCTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCGCTGGAATTCCGTCGCACGCTGTGCAGGCCTCAAGAGATCAGGGAAAAGTTGCAGGCTGAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGCTTAAGCAAGCAAGGAATCTGAAGTGTGACGTCGACAGTGAACAGTTCAAAGATGCCTTACGTTACGTGTGGATGCCCCGTTTGATTGAGCGGATTCAACCGTCATCGGAAACTCACGACCCGCTCCATGTGTCCCCCTCCGAACTTTACCCGAACCCAACCCCTCCGCTCCATCACCAAAACGGGTTCCACGGTTCGTGTTCAGGTTCCAATGCCTTGGAATCATCAAGTGCCAAGTCTGAAGATTTGGGTCATAATGTTTCAGTTCCGGGCTTGTGTGAAAATTTGAATGACCGAGACATGGCACGGGGGAATATGACGCTACCTTTTGGTGGTGGGGACTCAATGGAGAGTTTGTGGGATGATGAGAATCTGTGGCTTATGCAGCAACTTTGTGATGATCTGGAAATTAAAGACAATTTCCTTGCGTGA 792 0.4912 MDVNKKKSRSAEEVKNSEDTRKGPWSVEEDALLQNYVATHGDGRWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVLKQARNLKCDVDSEQFKDALRYVWMPRLIERIQPSSETHDPLHVSPSELYPNPTPPLHHQNGFHGSCSGSNALESSSAKSEDLGHNVSVPGLCENLNDRDMARGNMTLPFGGGDSMESLWDDENLWLMQQLCDDLEIKDNFLA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02855 263 Gene3D - 79 120 - -
Viun1g02855 263 MobiDBLite consensus disorder prediction 155 204 - -
Viun1g02855 263 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Viun1g02855 263 MobiDBLite consensus disorder prediction 179 203 - -
Viun1g02855 263 MobiDBLite consensus disorder prediction 1 22 - -
Viun1g02855 263 CDD SANT 24 69 IPR001005 -
Viun1g02855 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Viun1g02855 263 FunFam Myb transcription factor 22 74 - -
Viun1g02855 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 187 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun1g02855 263 SMART sant 21 71 IPR001005 -
Viun1g02855 263 SMART sant 74 122 IPR001005 -
Viun1g02855 263 FunFam MYB transcription factor 79 142 - -
Viun1g02855 263 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Viun1g02855 263 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Viun1g02855 263 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Viun1g02855 263 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Viun1g02855 263 Gene3D - 23 74 - -
Viun1g02855 263 CDD SANT 79 118 IPR001005 -
Viun1g02855 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02855 Viun-Chr1 37602107 37603493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02855 19 254 MYB Transcription Factor Family AT2G47190 52.000 4.22e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g02855 Myb_DNA-binding 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02855 K09422 - gmx:100797220 380.178