Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02854 ATGGAGAGGAGTTTATCAGAAAACGGGTCATCGGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAAGATTCAGTTCTCTTCGATTACATCACAGTTCACGGTGAAGGTCACTGGAACTCTGTCGCTCGCTACACAGGTCTCAAACGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATAACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAATAGGTGGTCGAAAATAGCGGAACATTTACCGGGAAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGAGTGGATGCCACGTATGCTGGAGCGGATTCAGGCACAGGCCTCATCATCATCATCAGGCCAAGCCCAAACCGCTTTAATCTCCAACGTTAAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCACTGCCAGTAACGCGGGTTTGGTGTCAGAGGCTTCATCGGCGGTTGAAGTCCACGCCCCCTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAGTGGGTGGTGGAAGTTGGTGTTCTTATGGTGCAGAAGAAGGTTATAGCAGGGTATGGGAAGAGAGAAATTATGGGTACTCGGAGATAACAGGAAATGGTTTCGGTGGCGTTGATTTGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAACAGCTCGCTGATGATTTCTGA 831 0.497 MERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSVLFDYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFEWMPRMLERIQAQASSSSSGQAQTALISNVKAHSDPCGGATATATASNAGLVSEASSAVEVHAPSLSDSGASYSLVGGGSWCSYGAEEGYSRVWEERNYGYSEITGNGFGGVDLWTEENICFLQQQLADDF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02854 276 Gene3D - 82 123 - -
Viun1g02854 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Viun1g02854 276 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Viun1g02854 276 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Viun1g02854 276 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Viun1g02854 276 SMART sant 24 74 IPR001005 -
Viun1g02854 276 SMART sant 77 125 IPR001005 -
Viun1g02854 276 CDD SANT 27 72 IPR001005 -
Viun1g02854 276 FunFam Myb transcription factor 25 77 - -
Viun1g02854 276 MobiDBLite consensus disorder prediction 1 26 - -
Viun1g02854 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Viun1g02854 276 Gene3D - 24 77 - -
Viun1g02854 276 FunFam MYB transcription factor 82 145 - -
Viun1g02854 276 CDD SANT 82 121 IPR001005 -
Viun1g02854 276 MobiDBLite consensus disorder prediction 1 23 - -
Viun1g02854 276 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 189 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun1g02854 276 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Viun1g02854 276 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02854 Viun-Chr1 37587417 37588880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02854 1 275 MYB Transcription Factor Family AT2G47190 47.653 7.37e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g02854 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02854 K09422 - gmx:100819467 406.757