Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02852 ATGGATGCCAAAGATATCCTGGGATTGCCAAAAAACTCATTCCCCTCTCTTGAGAAGAAGTCTCGACCTCCCAAAGAGTCTCAACGAAAACCTGATGGCATTTCGCGCGAGGTGTATGCGCTTACAGGTGGGTTGGCCCCTCTTATGCCTGCTATTGAAGCTTCTCAATTGAAGAAAAAGCCTCCTCCTCTCGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTGCAACTTTACCACTGGGTTCGAGTTGTCAATGGTGTTCCTCCTACGGGTGACTATTCTTTTGCCAAGTATAATAAGGCAGTTGATGTGATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAAATCCTATGTGGACCAAAGAGGAGACTGATCAACTATTTGACTTGTGCGAGAGATTTGATCTCCGATTTGTTGTAATAGCCGATAGGTTTCCATCATCTCGAACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCGCGGGCTATATTGGTTGCTAGAGCTCCATCTTCTGGGGATGTTGCAGCACATCCTCTTGTTAAGGAACTGTATAATGTTTCACAAGAAATGGAGCGAAAGCGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGCAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAGGATAGCTGAATCTCGCATTCCACCCAAGGTTGCTGAAGAGTCTCACTTGGCTGCTCCTAATGCTGGTGCAGAAGCTACAGAGAGGGCTGTCCCTGGTGAAACTGTATCTCCATCGAATGTGCAACTTCCACCAATGGTTGCGCCTCCTACTTTATCAGATAATGCATCTACTCTAGCTTCTCTTCGCATGCTACGTGTATATTTGAGAACATATGCACTTGAACAAATGGTGCAAGCTGCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACCTTGCAAGACCTTGGGGTCAACTTGAAACCAAGAGTTCCAACAAAAGCTGTTTGTGCGGAGCACCTTGAGTTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAACAGGTTCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGCACACCTAAGCATTTACATCGTGCTGGGGATCAGGATCGGACATTCATTCCAGATGCAATGAATTTTGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGTAAGGCACCTGGAGCTCCATCGGCTCATAAAAGACCTAGAAAACTAAAGGCTACAGATCTCTAG 1317 0.4457 MDAKDILGLPKNSFPSLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPAIEASQLKKKPPPLEKITWQWLPFTSSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKAVDVIKYTDEEYDKYLTNPMWTKEETDQLFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVSRAILVARAPSSGDVAAHPLVKELYNVSQEMERKRALSMVLSQTRQQERRDEEVLVEAKRIAESRIPPKVAEESHLAAPNAGAEATERAVPGETVSPSNVQLPPMVAPPTLSDNASTLASLRMLRVYLRTYALEQMVQAANSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLHRAGDQDRTFIPDAMNFGVERVGKKDQKRKAPGAPSAHKRPRKLKATDL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02852 438 Gene3D - 98 184 - -
Viun1g02852 438 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Viun1g02852 438 MobiDBLite consensus disorder prediction 369 438 - -
Viun1g02852 438 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 429 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Viun1g02852 438 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
Viun1g02852 438 CDD SANT_DMAP1_like 129 171 - -
Viun1g02852 438 SMART sant 125 174 IPR001005 -
Viun1g02852 438 MobiDBLite consensus disorder prediction 1 34 - -
Viun1g02852 438 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Viun1g02852 438 MobiDBLite consensus disorder prediction 408 422 - -
Viun1g02852 438 MobiDBLite consensus disorder prediction 239 275 - -
Viun1g02852 438 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02852 Viun-Chr1 37570268 37577312 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun1g02852 SANT_DAMP1_like 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02852 K11324 - gmx:100818926 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02852 1 37570268 37577312 Viun1g02852 1 37570268 37577312 ECH