Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02844 ATGGAAAAGAAAGATCCTTTAGAAGTGGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCAACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAACAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCCAAGAAACCTAGGACAGGAGAGTCAAGGTCCAACTATTTATCTGTGAATGCAAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATCCCAACTGTGGAGGAAGTATGTTGCCTATTGCCCCACATCATTCCTCAATTCCACACCCACAAGTTACTACTCATATGCAAAACTGGGAACCTGGTGCTCCTGTGGTACAACATTCATTTCCCCCACAACAATTGCATTCACAGTTGGGTTCGATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGTCTCAGCCATTTATTACTGAGGTGCAGAGACAGCCATATCCGGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGAATTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCTGGAGGATAATTGCTGCAGTCTTTCACAATTGTCGTCATGTTCCTCCCAACAAGTTGCTGAAAAACACCAGGAAACAAATCATGACCACAGACAGTCAAATACAAGTCCTGTTGTTGCATAG 996 0.4327 MEKKDPLEVVADKVFVSCFNKEASKKEIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRTGESRSNYLSVNANFGPCSQEPAVWPLPNFGDPNCGGSMLPIAPHHSSIPHPQVTTHMQNWEPGAPVVQHSFPPQQLHSQLGSMPFGSIQAPKLPSQSQPFITEVQRQPYPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEEFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALYEKESQKQPELEDNCCSLSQLSSCSSQQVAEKHQETNHDHRQSNTSPVVA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02844 331 SMART rrm1_1 13 83 IPR000504 GO:0003723
Viun1g02844 331 SUPERFAMILY WW domain 250 282 IPR036020 GO:0005515
Viun1g02844 331 ProSitePatterns WW/rsp5/WWP domain signature. 251 276 IPR001202 GO:0005515
Viun1g02844 331 CDD WW 249 278 IPR001202 GO:0005515
Viun1g02844 331 ProSiteProfiles WW/rsp5/WWP domain profile. 251 278 IPR001202 GO:0005515
Viun1g02844 331 PANTHER RNA BINDING PROTEIN 12 279 - -
Viun1g02844 331 SUPERFAMILY RNA-binding domain, RBD 11 97 IPR035979 GO:0003676
Viun1g02844 331 MobiDBLite consensus disorder prediction 308 331 - -
Viun1g02844 331 Gene3D - 8 94 IPR012677 -
Viun1g02844 331 Gene3D - 234 296 - -
Viun1g02844 331 MobiDBLite consensus disorder prediction 214 239 - -
Viun1g02844 331 MobiDBLite consensus disorder prediction 163 186 - -
Viun1g02844 331 SMART ww_5 246 278 IPR001202 GO:0005515
Viun1g02844 331 Pfam WW domain 249 276 IPR001202 GO:0005515
Viun1g02844 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 72 IPR000504 GO:0003723
Viun1g02844 331 MobiDBLite consensus disorder prediction 155 186 - -
Viun1g02844 331 MobiDBLite consensus disorder prediction 214 247 - -
Viun1g02844 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02844 Viun-Chr1 37535916 37543997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02844 14 137 Eukaryotic Initiation Factors Gene Family AT1G71770 28.682 8.40e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02844 K13207 - gmx:100776162 544.273