Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02843 ATGGAAAAGAAAGATCCTTTAGAAGGGGTTCGTGGGTTTTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGTGGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCAACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAACAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCCAAGAAACCTAGGACAGGAGAGTCAAGGTCCAACTATTTATCTGTGAATGCAAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATCCCAACTGTGGAGGAAGTATGTTGCCTATTGCCCCACATCATTCCTCAATTCCACACCCACAAGTTACTACTCATATGCAAAACTGGGAACCTGGTGCTCCTGTGGTACAACATTCATTTCCCCCACAACAATTGCATTCACAGTTGGGTTCGATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGTCTCAGCCATTTATTACTGAGGTGCAGAGACAGCCATATCCGGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGAATTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCTGGAGGATAATTGCTGCAGTCTTTCACAATTGTCGTCATGTTCCTCCCAACAAGTTGCTGAAAAACACCAGGAAACAAATCATGACCACAGACAGTCAAATACAAGTCCTGTTGTTGCATAG 1044 0.433 MEKKDPLEGVRGFCRNMEKKDPLEVVADKVFVSCFNKEASKKEIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRTGESRSNYLSVNANFGPCSQEPAVWPLPNFGDPNCGGSMLPIAPHHSSIPHPQVTTHMQNWEPGAPVVQHSFPPQQLHSQLGSMPFGSIQAPKLPSQSQPFITEVQRQPYPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEEFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALYEKESQKQPELEDNCCSLSQLSSCSSQQVAEKHQETNHDHRQSNTSPVVA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02843 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 88 IPR000504 GO:0003723
Viun1g02843 347 SMART ww_5 262 294 IPR001202 GO:0005515
Viun1g02843 347 ProSiteProfiles WW/rsp5/WWP domain profile. 267 294 IPR001202 GO:0005515
Viun1g02843 347 PANTHER RNA BINDING PROTEIN 28 295 - -
Viun1g02843 347 ProSitePatterns WW/rsp5/WWP domain signature. 267 292 IPR001202 GO:0005515
Viun1g02843 347 SMART rrm1_1 29 99 IPR000504 GO:0003723
Viun1g02843 347 Pfam WW domain 265 292 IPR001202 GO:0005515
Viun1g02843 347 CDD WW 265 294 IPR001202 GO:0005515
Viun1g02843 347 SUPERFAMILY RNA-binding domain, RBD 27 113 IPR035979 GO:0003676
Viun1g02843 347 SUPERFAMILY WW domain 266 298 IPR036020 GO:0005515
Viun1g02843 347 Gene3D - 250 312 - -
Viun1g02843 347 Gene3D - 24 110 IPR012677 -
Viun1g02843 347 MobiDBLite consensus disorder prediction 324 347 - -
Viun1g02843 347 MobiDBLite consensus disorder prediction 179 202 - -
Viun1g02843 347 MobiDBLite consensus disorder prediction 230 255 - -
Viun1g02843 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 103 IPR000504 GO:0003723
Viun1g02843 347 MobiDBLite consensus disorder prediction 171 202 - -
Viun1g02843 347 MobiDBLite consensus disorder prediction 230 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02843 Viun-Chr1 37535916 37543997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02843 30 153 Eukaryotic Initiation Factors Gene Family AT1G71770 28.682 8.37e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02843 K13207 - gmx:100776162 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02843 1 37535916 37543997 Viun1g02843 1 37535916 37543997 ECH