Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02836 ATGTCGAAGAGGAAGTTCGGATTCGAAGGTTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCCCAGGCCCCTCAGCGACTCTACGTCCCTCCCTCCTCCCGTCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATTGACTACGACGACAACAACAACGACGAAGGGAACAAGAACAGCAACGATGGCGACGAAATTGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGGCGCCACCGCCCAAGCCGAAGGAGAAGGCTGAGGACCGGTACCGGGACGACGACGACGATCCCATGGAGAGCTTCCTGAAGGCAAAGAAGGATTTAGGGCTGACTCTCGCGTCCGAGGCGCTGCACGCTGGGTACGATTCCGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGATTGAGTATGATTCCGACGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGATCACTCTTCCATTGACTACGAACCCTTCAATAAGGATTTTTATGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGACGTAAGCGAATACCGGAAGAGTTTGGCTATTCGGGTATCTGGTTTTGATGTTCCTAAGCCAATAAAAGCTTTTGAGGAATGTGGGTTTTCGTCTCAGATTATGAATGCTATAAAAAAACAAGGGTACGAGAAGCCTACATCTATACAATGTCAGGCTTTCCCGGTTGTGCTCTCCGGCAGGGATATTATTGGTATAGCTAAAACTGGTTCAGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAAGAGGGGCCTATAGGGGTTATATGTGCACCTACCAGAGAATTGGCTCATCAGATATACCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGGGTACGTGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGACTGATAGACATGCTGAAAATGAAGGCATTGACGATGATGAGAGCAACTTACCTGGTGCTTGATGAAGCGGATCGGATGTTTGATCTTGGGTTTGAACCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGCCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATCAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTTATGTGATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTTTAGTTTTTGCTTCAAAGAAGGCCACTGTGGATGAAATAGAATCGCAGTTGGCTCAAAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCCGGTCTCTACCATGTGCTCATTGCAACTGATGTTGCAGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTCGATATTGCAAAGGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGATTTGCAGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCGTGGAGTTGATGGATCTTGCGATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGGGGAGGTGGCCGTGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCCGAGTCGAACAACGCACCATCTAACCCAGTTCCTACTCGATCTGCCGCAGTAAATTCTCTGCGGACCGGAATGATGTCACAATTTAGGAATAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTCGGTAACAATACAAACATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACGTATCAGCACACCGCTTCACCCAGTCCTGTTTCCTCAGCGGTAAATTCCAGCACTCAAGGTTCTGGAGTAAATTCTGGTCAGAAGAGCACGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2301 0.4724 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNNDEGNKNSNDGDEIDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYRDDDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEECGFSSQIMNAIKKQGYEKPTSIQCQAFPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVYVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNPVPTRSAAVNSLRTGMMSQFRNNFVAASSNSQNQGFGNNTNMAANKRPALPGFVSGGSIGGDVNTYQHTASPSPVSSAVNSSTQGSGVNSGQKSTNSSKPKERRRPSGWDR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02836 766 CDD SF2_C_DEAD 440 572 - -
Viun1g02836 766 SMART ultradead3 241 443 IPR014001 -
Viun1g02836 766 MobiDBLite consensus disorder prediction 719 751 - -
Viun1g02836 766 MobiDBLite consensus disorder prediction 719 766 - -
Viun1g02836 766 SMART helicmild6 481 562 IPR001650 -
Viun1g02836 766 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
Viun1g02836 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 597 IPR027417 -
Viun1g02836 766 FunFam probable ATP-dependent RNA helicase DDX17 184 431 - -
Viun1g02836 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 602 IPR001650 -
Viun1g02836 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Viun1g02836 766 MobiDBLite consensus disorder prediction 13 31 - -
Viun1g02836 766 MobiDBLite consensus disorder prediction 647 661 - -
Viun1g02836 766 MobiDBLite consensus disorder prediction 609 661 - -
Viun1g02836 766 Pfam Helicase conserved C-terminal domain 457 562 IPR001650 -
Viun1g02836 766 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 186 602 - -
Viun1g02836 766 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Viun1g02836 766 CDD DEADc_DDX42 233 429 - -
Viun1g02836 766 Gene3D - 185 429 IPR027417 -
Viun1g02836 766 Gene3D - 430 606 IPR027417 -
Viun1g02836 766 MobiDBLite consensus disorder prediction 1 109 - -
Viun1g02836 766 MobiDBLite consensus disorder prediction 752 766 - -
Viun1g02836 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Viun1g02836 766 MobiDBLite consensus disorder prediction 56 109 - -
Viun1g02836 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02836 Viun-Chr1 37466239 37470279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02836 222 578 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 6.53e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02836 K12835 - gmx:100814854 1318.52