Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02834 ATGTCAATCGGTATGTTAAAAAGGTTTCAAGGCTTGCTGCTGAAATGGATGCTTATATTGTCTTGCCTGGCATTTATGATTGTGGCTGGTGAAAATGATAAAACAATGGTGCCCCCTTCTTTATATGATTCTAGATCACCTTTGGCCTTTACTGTTGTTCACGATCTACCTCTACCAGCAAGTCTCCATTTGTCAAAGCATGTGCTTTCTCAAGGTGCGCCACTTGAAGCACCGTCACCAGTCAATCCTCCTTCATACGGTCCTTTCTCAAGTAATGGCCAGTCCCCTACAAGTTCACATTTATCCATACCATTCAAAATGAAGAGTGAAATGAAACATCCAATTCCTGGCTTTAAATATATTGCTCCTGTACATTCTACTGCAGCTGCAGGCCCTTCTGCTTCAACTCAGCCACCATTGTCTCCTTATGCTTCCAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGCCACTCCTACGTTAGCTGCATCACCTGTGAAAACACCTTCGTATCATTCACCTACCGCTATGTCATCATCTGGTTCTTCAGGAAGGCGTTCAAATCTGTTTATTATTCTTGGAATTGTTATTGGCATAATCTTTATTGGTATCATATCTGTACTTATATTCTGTTTATGTACATTCCTGCCCAAAGCAAACGCTCCTCCTGGGGAAACTGAAAAGCCAAGGATAGAGAGTACAATTTCAACTGTGGGTTCTCTTCCTCACCCAAGTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAACTTTGAAACAGCGAGTGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTGAACGATGGTACTCCTGTTGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTGGAAGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTCAGTAATCGTGACTCGTCACAAAATCTACTTTGCTATGAGCTTGTTCCCAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATTAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCGCTTGATGCTGCAAGGGGACTTTCATACCTGCACGAAGACTCACAGCCCTGTGTAATACACAGAGACTTCAAGGCATCCAACATATTACTGGAGAACAACTTTCATGCTAAGGTTGCAGATTTTGGTCTCGCTAAGCAAGCACCTGAAGGCAGATCAAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAGTATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTCTATAGCTATGGCGTTGTCTTACTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAACCAACTGGGCAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTCGAGATAAGGATAGGTTGGAAGAGATTGTTGATCCAAGCCTCGGGGGAAAGTATCCTAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAACCAGCGACCCACAATGGGTGAAGTGGTGCAGTCACTTAAAATGGTGCAACGCGTCACAGAATACCATGATTCTCTGTTGGCCTCATCCAATACTCGAGCCAACCTTAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCTGTATTCTCTTCGGGTCCTTACTCTGGTATAAGTGCCTTTGAAAATGACAACATTTCAAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATAA 1821 0.4316 MSIGMLKRFQGLLLKWMLILSCLAFMIVAGENDKTMVPPSLYDSRSPLAFTVVHDLPLPASLHLSKHVLSQGAPLEAPSPVNPPSYGPFSSNGQSPTSSHLSIPFKMKSEMKHPIPGFKYIAPVHSTAAAGPSASTQPPLSPYASNCCKQDMVLKRATPTLAASPVKTPSYHSPTAMSSSGSSGRRSNLFIILGIVIGIIFIGIISVLIFCLCTFLPKANAPPGETEKPRIESTISTVGSLPHPSSTRFIAYEELKEATNNFETASVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIVDPSLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRVTEYHDSLLASSNTRANLRQSSSTFEFDGTSSVFSSGPYSGISAFENDNISRTVVFSEDLCEGR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02834 606 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Viun1g02834 606 CDD STKc_IRAK 268 538 - -
Viun1g02834 606 Gene3D Transferase(Phosphotransferase) domain 1 340 559 - -
Viun1g02834 606 FunFam Receptor-like serine/threonine-protein kinase ALE2 340 557 - -
Viun1g02834 606 MobiDBLite consensus disorder prediction 75 100 - -
Viun1g02834 606 PANTHER OS01G0750732 PROTEIN 152 553 - -
Viun1g02834 606 MobiDBLite consensus disorder prediction 86 100 - -
Viun1g02834 606 SUPERFAMILY Protein kinase-like (PK-like) 235 539 IPR011009 -
Viun1g02834 606 Pfam Protein kinase domain 263 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02834 606 Gene3D Phosphorylase Kinase; domain 1 243 339 - -
Viun1g02834 606 ProSiteProfiles Protein kinase domain profile. 262 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02834 606 FunFam Receptor-like serine/threonine-protein kinase ALE2 242 339 - -
Viun1g02834 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02834 Viun-Chr1 37458547 37464494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02834 159 606 Receptor kinase-like Gene Family AT4G02010 75.885 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun1g02834 Pkinase 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02834 - - gmx:100775615 816.609