Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02833 ATGTCAATCGGTATGTTAAAAAGGTTTCAAGGCTTGCTGCTGAAATGGATGCTTATATTGTCTTGCCTGGCATTTATGATTGTGGCTGGTGAAAATGATAAAACAATGGTGCCCCCTTCTTTATATGATTCTAGATCACCTTTGGCCTTTACTGTTGTTCACGATCTACCTCTACCAGCAAGTCTCCATTTGTCAAAGCATGTGCTTTCTCAAGGTGCGCCACTTGAAGCACCGTCACCAGTCAATCCTCCTTCATACGGTCCTTTCTCAACTGCAGGCCCTTCTGCTTCAACTCAGCCACCATTGTCTCCTTATGCTTCCAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGCCAGTAAGAGTTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAATCCTAGTTGGAATGATTTTCTTAATGAATTAGCTGTCCAGCTTGGATTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTTCTCAGTGTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAGTGAAGTTTCTAAAATAAACTCGTCGCTTTCAATGCATAAGGTTAAACTAGACCCTCGATTAGTGGGTGGATACCAACTTCTCAATATAACTTGGTTTGAACCACCAGCGCCTTCACAAGCTCCTACGTTAGCTGCATCACCTGTGAAAACACCTTCGTATCATTCACCTACCGCTATGTCATCATCTGGTTCTTCAGGAAGGCGTTCAAATCTGTTTATTATTCTTGGAATTGTTATTGGCATAATCTTTATTGGTATCATATCTGTACTTATATTCTGTTTATGTACATTCCTGCCCAAAGCAAACGCTCCTCCTGGGGAAACTGAAAAGCCAAGGATAGAGAGTACAATTTCAACTGTGGGTTCTCTTCCTCACCCAAGTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAACTTTGAAACAGCGAGTGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTGAACGATGGTACTCCTGTTGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTGGAAGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTCAGTAATCGTGACTCGTCACAAAATCTACTTTGCTATGAGCTTGTTCCCAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATTAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCGCTTGATGCTGCAAGGGGACTTTCATACCTGCACGAAGACTCACAGCCCTGTGTAATACACAGAGACTTCAAGGCATCCAACATATTACTGGAGAACAACTTTCATGCTAAGGTTGCAGATTTTGGTCTCGCTAAGCAAGCACCTGAAGGCAGATCAAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAGTATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTCTATAGCTATGGCGTTGTCTTACTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAACCAACTGGGCAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTCGAGATAAGGATAGGTTGGAAGAGATTGTTGATCCAAGCCTCGGGGGAAAGTATCCTAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAACCAGCGACCCACAATGGGTGAAGTGGTGCAGTCACTTAAAATGGTGCAACGCGTCACAGAATACCATGATTCTCTGTTGGCCTCATCCAATACTCGAGCCAACCTTAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCTGTATTCTCTTCGGGTCCTTACTCTGGTATAAGTGCCTTTGAAAATGACAACATTTCAAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATAA 2043 0.4249 MSIGMLKRFQGLLLKWMLILSCLAFMIVAGENDKTMVPPSLYDSRSPLAFTVVHDLPLPASLHLSKHVLSQGAPLEAPSPVNPPSYGPFSTAGPSASTQPPLSPYASNCCKQDMVLKRASKSCHCAYPIKLDLFLSNVSQNPSWNDFLNELAVQLGLRNTQIELINFYVLSVSTLNISMNITPHKGISFSASEVSKINSSLSMHKVKLDPRLVGGYQLLNITWFEPPAPSQAPTLAASPVKTPSYHSPTAMSSSGSSGRRSNLFIILGIVIGIIFIGIISVLIFCLCTFLPKANAPPGETEKPRIESTISTVGSLPHPSSTRFIAYEELKEATNNFETASVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIVDPSLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRVTEYHDSLLASSNTRANLRQSSSTFEFDGTSSVFSSGPYSGISAFENDNISRTVVFSEDLCEGR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02833 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Viun1g02833 680 PANTHER OS01G0750732 PROTEIN 105 627 - -
Viun1g02833 680 SUPERFAMILY Protein kinase-like (PK-like) 309 613 IPR011009 -
Viun1g02833 680 Gene3D Transferase(Phosphotransferase) domain 1 414 633 - -
Viun1g02833 680 Gene3D Phosphorylase Kinase; domain 1 317 413 - -
Viun1g02833 680 CDD STKc_IRAK 342 612 - -
Viun1g02833 680 Pfam Protein kinase domain 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02833 680 FunFam Receptor-like serine/threonine-protein kinase ALE2 316 413 - -
Viun1g02833 680 ProSiteProfiles Protein kinase domain profile. 336 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02833 680 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Viun1g02833 680 FunFam Receptor-like serine/threonine-protein kinase ALE2 414 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02833 Viun-Chr1 37458547 37464494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02833 12 680 Receptor kinase-like Gene Family AT4G02010 66.152 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun1g02833 Pkinase 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02833 - - gmx:100775615 1195.65