Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02832 ATGTCAATCGGTATGTTAAAAAGGTTTCAAGGCTTGCTGCTGAAATGGATGCTTATATTGTCTTGCCTGGCATTTATGATTGTGGCTGGTGAAAATGATAAAACAATGGTGCCCCCTTCTTTATATGATTCTAGATCACCTTTGGCCTTTACTGTTGTTCACGATCTACCTCTACCAGCAAGTCTCCATTTGTCAAAGCATGTGCTTTCTCAAGGTGCGCCACTTGAAGCACCGTCACCAGTCAATCCTCCTTCATACGGTCCTTTCTCAAGTAATGGCCAGTCCCCTACAAGTTCACATTTATCCATACCATTCAAAATGAAGAGTGAAATGAAACATCCAATTCCTGGCTTTAAATATATTGCTCCTGTACATTCTACTGCAGCTGCAGGCCCTTCTGCTTCAACTCAGCCACCATTGTCTCCTTATGCTTCCAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGCCAGTAAGAGTTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAATCCTAGTTGGAATGATTTTCTTAATGAATTAGCTGTCCAGCTTGGATTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTTCTCAGTGTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAGTGAAGTTTCTAAAATAAACTCGTCGCTTTCAATGCATAAGGTTAAACTAGACCCTCGATTAGTGGGTGGATACCAACTTCTCAATATAACTTGGTTTGAACCACCAGCGCCTTCACAAGCTCCTACGTTAGCTGCATCACCTGTGAAAACACCTTCGTATCATTCACCTACCGCTATGTCATCATCTGGTTCTTCAGGAAGGCGTTCAAATCTGTTTATTATTCTTGGAATTGTTATTGGCATAATCTTTATTGGTATCATATCTGTACTTATATTCTGTTTATGTACATTCCTGCCCAAAGCAAACGCTCCTCCTGGGGAAACTGAAAAGCCAAGGATAGAGAGTACAATTTCAACTGTGGGTTCTCTTCCTCACCCAAGTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAACTTTGAAACAGCGAGTGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTGAACGATGGTACTCCTGTTGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTGGAAGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTCAGTAATCGTGACTCGTCACAAAATCTACTTTGCTATGAGCTTGTTCCCAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATTAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCGCTTGATGCTGCAAGGGGACTTTCATACCTGCACGAAGACTCACAGCCCTGTGTAATACACAGAGACTTCAAGGCATCCAACATATTACTGGAGAACAACTTTCATGCTAAGGTTGCAGATTTTGGTCTCGCTAAGCAAGCACCTGAAGGCAGATCAAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAGTATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTCTATAGCTATGGCGTTGTCTTACTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAACCAACTGGGCAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTCGAGATAAGGATAGGTTGGAAGAGATTGTTGATCCAAGCCTCGGGGGAAAGTATCCTAAAGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAACCAGCGACCCACAATGGGTGAAGTGGTGCAGTCACTTAAAATGGTGCAACGCGTCACAGAATACCATGATTCTCTGTTGGCCTCATCCAATACTCGAGCCAACCTTAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCTGTATTCTCTTCGGGTCCTTACTCTGGTATAAGTGCCTTTGAAAATGACAACATTTCAAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATAA 2157 0.4223 MSIGMLKRFQGLLLKWMLILSCLAFMIVAGENDKTMVPPSLYDSRSPLAFTVVHDLPLPASLHLSKHVLSQGAPLEAPSPVNPPSYGPFSSNGQSPTSSHLSIPFKMKSEMKHPIPGFKYIAPVHSTAAAGPSASTQPPLSPYASNCCKQDMVLKRASKSCHCAYPIKLDLFLSNVSQNPSWNDFLNELAVQLGLRNTQIELINFYVLSVSTLNISMNITPHKGISFSASEVSKINSSLSMHKVKLDPRLVGGYQLLNITWFEPPAPSQAPTLAASPVKTPSYHSPTAMSSSGSSGRRSNLFIILGIVIGIIFIGIISVLIFCLCTFLPKANAPPGETEKPRIESTISTVGSLPHPSSTRFIAYEELKEATNNFETASVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIVDPSLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRVTEYHDSLLASSNTRANLRQSSSTFEFDGTSSVFSSGPYSGISAFENDNISRTVVFSEDLCEGR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02832 718 FunFam Receptor-like serine/threonine-protein kinase ALE2 452 669 - -
Viun1g02832 718 Gene3D Transferase(Phosphotransferase) domain 1 452 671 - -
Viun1g02832 718 PANTHER OS01G0750732 PROTEIN 144 665 - -
Viun1g02832 718 CDD STKc_IRAK 380 650 - -
Viun1g02832 718 SUPERFAMILY Protein kinase-like (PK-like) 347 651 IPR011009 -
Viun1g02832 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Viun1g02832 718 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Viun1g02832 718 MobiDBLite consensus disorder prediction 80 99 - -
Viun1g02832 718 ProSiteProfiles Protein kinase domain profile. 374 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02832 718 Pfam Protein kinase domain 375 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02832 718 FunFam Receptor-like serine/threonine-protein kinase ALE2 354 451 - -
Viun1g02832 718 Gene3D Phosphorylase Kinase; domain 1 355 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02832 Viun-Chr1 37458547 37464495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02832 12 718 Receptor kinase-like Gene Family AT4G02010 67.273 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun1g02832 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02832 - - gmx:100775615 1263.83