Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02824 ATGGACACTGATGCTAATGCCTCTTCCCAACCCGACTCAGAAGCATCTTCAGAGCTCAAATCATCAGAGACTCAAACATCAAAGAAAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCAGCCAAAAAACAGGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCGTCACATATACCTCTACACATAACCATCCATGCCCCACCACCACCACCGCCACCTCCACCACCACAAATTCACCCCAACAACCAAAAGAATCTGAATCCGAAACCACCCAAGACCTCTCAGGTATCTCAAAGGAGGAAGATCAAGAACATATAGAAGAAGAACAAAGGGATGATGATAAGCCCAGAGATGAAGGTAGAAATGAAGAAAAGTTTCTTTACCTGCAATCTTCCCAAGACATAATAATAGAACAAGAAGACCCTTTCAAGCTAAACACGGAGAAAAGCCATGAGAGAATAGATCTTCTCTTGGAGGAGGAAGAACCCCTTTGTTACGCACAAGTCAAGAACTTGTCGGCTTCCGAAAGCGAAGAACTTGATTTTTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTCTTTAACTTCACGAGGAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 651 0.4378 MDTDANASSQPDSEASSELKSSETQTSKKRGYYKCSTSKGCSAKKQVERCRTDASMLIVTYTSTHNHPCPTTTTATSTTTNSPQQPKESESETTQDLSGISKEEDQEHIEEEQRDDDKPRDEGRNEEKFLYLQSSQDIIIEQEDPFKLNTEKSHERIDLLLEEEEPLCYAQVKNLSASESEELDFFDELEELPMSSSFFNFTRSIFSDERIPVAPS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02824 216 SUPERFAMILY WRKY DNA-binding domain 27 70 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun1g02824 216 MobiDBLite consensus disorder prediction 97 128 - -
Viun1g02824 216 MobiDBLite consensus disorder prediction 1 49 - -
Viun1g02824 216 MobiDBLite consensus disorder prediction 61 96 - -
Viun1g02824 216 SMART WRKY_cls 23 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g02824 216 MobiDBLite consensus disorder prediction 1 43 - -
Viun1g02824 216 MobiDBLite consensus disorder prediction 61 129 - -
Viun1g02824 216 Gene3D WRKY domain 17 71 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun1g02824 216 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 30 199 IPR044810 GO:0003700
Viun1g02824 216 Pfam WRKY DNA -binding domain 26 68 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun1g02824 216 ProSiteProfiles WRKY domain profile. 30 70 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02824 Viun-Chr1 37439497 37441017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02824 30 77 WRKY Transcription Factor Family AT2G34830 68.750 2.03e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun1g02824 WRKY 2.5e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02824 - - var:108328057 275.404