Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02820 ATGGAACTTGACCAATTTTCATCCACAGCTTTAAATTTAAGAGAAATCCTAGTGGGTTATGGCTCTACTCAAGAAGATGTGTTCCAAGGGAAAGAGGGTTTCTCTGGAATGGAATTGCTGGGATCTGTTGAGGATGAAAAAGGAACCAAACTGTTCGAGGATGAAGATCACAAACAGCTTCAAGAACCCCAAGTTGATAAGTTGTTAGAAGAGTTTAACTATGACCATGATATGCAACTGAAACCAACACCACAGTTCGATGAAACTACATGGCCAGGGAAACATGACTTAGAATCAGCTGAATACAATAATCATGTGCCACCATCATTATCATCCTTAGAGCTGCTGAGAAACTACAGAAGCCGATTTAAGAGGATAAGCGAGCAAAATATAACAAAACCTTCTTTGGATCACCACCAGATATCAACTGAAGAAATTATGAGAGTAGCTGGAGCAAGGTATGTTCAATATTCTGCACATTGGAATGATAGTTTTTGCATCCCTATGCACCCATATGGATTGGATTTTGGTGGTTTGTCTGAGGAAGAAAATAGAGACGTAGAACTTGTTCAATTTCTCCTTGCTGCAGCTGAGAGGGTAGGTTGCTACCAATTTGAACGTGCAAGTAGGTTACTTCTCCACTGCCAACGAAATTCATCACCCAATAATGCAAGTCCTGTTCAAAGAGTTATCTTTCACTTTGCTGAAGCACTTCGAGAGAGAATTGATAAAGGACTAGGAAGAACGACAACGAAGGGATCAGACAAAAATGAAGAAAGGGGGTTGATTCAAAAGATTGACACCAACGTTGCCCTAACATGCCATCAAAATATTCCTTTCAATCAAGTCATGCAATTCACCGGAATACAAACTATAGTGGAACATGTTGCATCCGAGACAAAAATCCATGTTATTGATCTTGAAACAATAAGTGGGGTGCACAATACAGTTTTGATGCAAGCACTGACAGAACGGCAGGATTGCAAAGTGCAACTTTTGAAGATAACTGCACTTGCACTTGATTCATGCAGAAGCATGATAGAAGAGACTGGAAAAAGGTTAGCTAGCTTTGCTGAATCCTTGAACTTACCCTTTTCATATAATGCAGTTTTTGTGACAGACTTTGCAGAGATAAGAGAAGACGATTTTGAAATTGGAGAGGGTGAAGCTGTGGCTGTGTACTCTCCATATTTTCTGAGGTGCATGGTATCAAGGCCAGAGTGTATGGAAAATTTGATGAGGGTTATATGGAATATGAAACCGGTTATAATGATAGTCCTTGAAGTTGAAGCAAACCATAACTCACCGTTCTTTGTGAATCGGTTCATTGAAGCGTTGTTCTTCTACTCAGCATTTTTTGATTGCCTTGGAACGTGCATAAAAGATGAGAATGAGTGCAGAAGGAAAATAGAAGCAGTGTTATCTGAGGGGATAAGGGACATTGTTGCAATGGAAGGGAGAGAAAGAAAAGTTAGAAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCAAGGTACCGAATGGTGGAAACAGGGTTTAGTGAGTCATCTCTTTACCAAGCTCACTTGGTGAATAAAGAGTTTGCTTTTGGGAAATTCTGCACTGTAGAAAAGAATGGGAAGTGTCTTTTAGTTGGTTGGAAAGGGACCCCTATTCATTCAATCTCAGCTTGGAGGTTTCTTTGA 1686 0.3992 MELDQFSSTALNLREILVGYGSTQEDVFQGKEGFSGMELLGSVEDEKGTKLFEDEDHKQLQEPQVDKLLEEFNYDHDMQLKPTPQFDETTWPGKHDLESAEYNNHVPPSLSSLELLRNYRSRFKRISEQNITKPSLDHHQISTEEIMRVAGARYVQYSAHWNDSFCIPMHPYGLDFGGLSEEENRDVELVQFLLAAAERVGCYQFERASRLLLHCQRNSSPNNASPVQRVIFHFAEALRERIDKGLGRTTTKGSDKNEERGLIQKIDTNVALTCHQNIPFNQVMQFTGIQTIVEHVASETKIHVIDLETISGVHNTVLMQALTERQDCKVQLLKITALALDSCRSMIEETGKRLASFAESLNLPFSYNAVFVTDFAEIREDDFEIGEGEAVAVYSPYFLRCMVSRPECMENLMRVIWNMKPVIMIVLEVEANHNSPFFVNRFIEALFFYSAFFDCLGTCIKDENECRRKIEAVLSEGIRDIVAMEGRERKVRNVKIDVWRRFFARYRMVETGFSESSLYQAHLVNKEFAFGKFCTVEKNGKCLLVGWKGTPIHSISAWRFL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02820 561 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 549 IPR005202 -
Viun1g02820 561 ProSiteProfiles GRAS family profile. 180 559 IPR005202 -
Viun1g02820 561 Pfam GRAS domain family 189 559 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02820 Viun-Chr1 37432211 37434256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02820 187 560 GRAS Transcription Factor Family AT1G66350 28.989 5.30e-42 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun1g02820 GRAS 4.1e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02820 - - vum:124820400 934.865