Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02807 ATGGCAGAGGTTGTTTTGTTAGTCGATGATTTGAAGCTGCTTTCTGGGGTTCCTCGCTGTAGAATTTGTCACGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAGGAAGAAGAAGAGTCAAACGAAAGAACAGAGATAACGGTTGAAGGAGTTGCAGTGGAAAGCGATTACTCGGAATGCAGTTCAGGCGGGGACAGAAACGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACGATTGTCTTGCTAGTAAGACATTTTTTCGCAGTGCTTTCAAACGGAACGCAAGATTACCCATTTACACTATTTACTGTAATTATATTAAAGGCTAGCGGAATTATTATACCTATGTACATAGTTATTAAGATTATTGGAGCCATTCAGAACAGTAGTAAGCAGTATCAAGATTCTGATGATGAAGATGAGATACAGCATAATGTAAATTTAAGACATTCATAG 633 0.3934 MAEVVLLVDDLKLLSGVPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNERTEITVEGVAVESDYSECSSGGDRNASCCRSLAIAFTIVLLVRHFFAVLSNGTQDYPFTLFTVIILKASGIIIPMYIVIKIIGAIQNSSKQYQDSDDEDEIQHNVNLRHS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02807 210 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Viun1g02807 210 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 191 IPR033275 -
Viun1g02807 210 CDD RING_CH-C4HC3_MARCH 20 67 - -
Viun1g02807 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Viun1g02807 210 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Viun1g02807 210 SMART ringv_2 19 68 IPR011016 GO:0008270
Viun1g02807 210 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Viun1g02807 210 SUPERFAMILY RING/U-box 18 72 - -
Viun1g02807 210 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Viun1g02807 210 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02807 Viun-Chr1 37345570 37349174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02807 20 108 C3H Transcription Factor Family AT2G37950 33.333 3.63e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02807 - - vum:124822982 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02807 1 37345570 37349174 Viun1g02807 1 37345570 37349174 ECH
Viun1g02807 1 37345570 37349174 Viun7g01798 7 23107061 23109512 PCT