Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02799 ATGGGGAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAGCGGAGGAGGATGGAATCTTGACCAAGTACATTCAGGCCAATGGAGAAGGTTCTTGGAGGACGCTGCCAAAAAATGCAGGATTGTTAAGATGTGGCAAGAGTTGCAGGTTAAGGTGGATTAACTATTTGAGAGCTGATCTAAAGAGAGGGGACATTTCTGTCGAAGAAGAAAACACCATTGTTAAGTTGCATGCTTCGTTAGGCAACAGGTGGTCCTTGATAGCAAGTCACTTGCCTGGAAGAACCGACAACGAGATAAAAAATTACTGGAACTCTCACCTAAGCAGAAAAATTTACACTTTCCGAGGCACAACCACTACCAAACCAGACACGATCACTCTCACTCTACCTCCCAAGCGGAAACGTGGTAGGACCAGTCGCTGGGCCATGAAGAAGAACAAAACCAAAACAGCACCTCCCTTAGCAGCAGTTCCTCTCCCACCAACACCGCCACTAGAGGCCGAGAAACATTCCTCCACCCATGAAAATACTAATCATACCCAAGAAGAAGAAAATGTAGGCACTAATGGAATGTGGGTAGAGGGTGAGAAAGAAATAACGAAGAATGAGGGTGACATATGGGGACCCTATGAGAAGGAAGTTATTAATGGGGGAGAGGGGGATCAGGTGTTGAGTTTTGAATCTTTCAACGACATCTTCGACACTTACTGCCCACAAGCAAGTGGGTGTTGGACCATTTCTGATGAAGGTTGCAGAGAGAGCAGTGAAGTGGTTGGGAATAAAACTTGTGACCACACCGTTATGTCGAGTGGTCGGGAAAAGCAGTGCTTTTGTTCTTCTTCGGTGGTGCTGGATCATAAGGACGAGTCTTTGTCATGGGAGCGGCATCAGAATCTCCTCTCTTGGCTTTGCGAAGATGAAGACTGGGACAAGGATTTGCAGAGCGTTGGTGAGATTGATCCTCAGAAACAAAAGGACATGGTTGATTGGTTTCTCTCTTGA 1017 0.4671 MGRAPCCEKVGLKKGRWTAEEDGILTKYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYLRADLKRGDISVEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFRGTTTTKPDTITLTLPPKRKRGRTSRWAMKKNKTKTAPPLAAVPLPPTPPLEAEKHSSTHENTNHTQEEENVGTNGMWVEGEKEITKNEGDIWGPYEKEVINGGEGDQVLSFESFNDIFDTYCPQASGCWTISDEGCRESSEVVGNKTCDHTVMSSGREKQCFCSSSVVLDHKDESLSWERHQNLLSWLCEDEDWDKDLQSVGEIDPQKQKDMVDWFLS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02799 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Viun1g02799 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun1g02799 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun1g02799 338 CDD SANT 16 61 IPR001005 -
Viun1g02799 338 SMART sant 66 114 IPR001005 -
Viun1g02799 338 SMART sant 13 63 IPR001005 -
Viun1g02799 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun1g02799 338 MobiDBLite consensus disorder prediction 127 189 - -
Viun1g02799 338 FunFam Myb transcription factor 11 67 - -
Viun1g02799 338 Gene3D - 11 67 - -
Viun1g02799 338 Gene3D - 71 116 - -
Viun1g02799 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun1g02799 338 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Viun1g02799 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun1g02799 338 CDD SANT 71 112 IPR001005 -
Viun1g02799 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun1g02799 338 FunFam Myb transcription factor 71 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02799 Viun-Chr1 37274485 37278846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02799 1 203 MYB Transcription Factor Family AT5G49330 56.818 3.19e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g02799 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02799 K09422 - gmx:100788260 390.578