Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02796 ATGTCTGATAATCACAAGACTCGGAGTTCGGCACCGAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGTCGGAGAGGACAGAAAATTCAGGTGTCACTACTGCAAGCGGGTTTTCGCGAACTCCCAGGCCTTAGGGGGACACCAAAACGCTCACAAGAAAGAGCGTCAGAGAGCCAGGCGATTCCAAATCCACAGCCACAGACGCTCCTCCGTGCCACCATCATCACCTCTTTCAGTTACGCCTCTTACCTTTCTCACTTCCCATGCAATAATACGATCGGTGCCACTCTCGGTTACACTGCCACCCATTTACCTTTCATCTCCTTCTCCTTCTACTTCTACCTCTGCAAAGCACTTCCCCTCGCGCCCCGTTTTCGTTCCTTCCTCCACCCACCTCACTGCTACTGCTACCACTACAACTCCATGTTTTCCTCTTCAGCTTTATGCCTCACCCTCTGTACTGCAATCTGCCTCTACTGTCCTTGATTTTGCTGCAGACAGGGAAGTTGATGTCCATCTCAAATTGTAG 555 0.4973 MSDNHKTRSSAPKLFGFPLTEQEEFAERKYDVGEDRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHSHRRSSVPPSSPLSVTPLTFLTSHAIIRSVPLSVTLPPIYLSSPSPSTSTSAKHFPSRPVFVPSSTHLTATATTTTPCFPLQLYASPSVLQSASTVLDFAADREVDVHLKL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02796 184 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Viun1g02796 184 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Viun1g02796 184 MobiDBLite consensus disorder prediction 61 75 - -
Viun1g02796 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Viun1g02796 184 MobiDBLite consensus disorder prediction 54 85 - -
Viun1g02796 184 Gene3D Classic Zinc Finger 21 84 - -
Viun1g02796 184 Pfam C2H2-type zinc finger 38 63 - -
Viun1g02796 184 PANTHER ZINC FINGER PROTEIN 5 7 184 IPR044299 GO:0010090
Viun1g02796 184 FunFam Zinc finger protein 6 26 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02796 Viun-Chr1 37266303 37267334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02796 7 72 C2H2 Transcription Factor Family AT1G67030 53.425 1.99e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02796 zf-C2H2_6 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02796 - - gmx:100806818 196.438