Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02780 ATGGTTTCGCTGAAACTGCAGAAGCGCCTCGCCGCAAGCGTTCTCAAGTGCGGCAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAACCCACCAAGATTCACTCTCGCTCACGCGCCCGTCGGATGAAGGAGGCCAAGAGAAAAGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGGGTCTTGATGGAGAGCATACACAAGTCCAAAGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGATCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCAGGGAAAGGAAAATTGCCCGGAGGGAGGAGCGATTGGCCCAAGGTCCAGGAGAAAAGGCATCAGCTGCACCCAGTGCTCCTGCTGCTACAGCATCACAGCCTGCCCAAGCACAAAAGAAATCCAAGAAGTGA 639 0.5008 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKASAAPSAPAATASQPAQAQKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02780 212 MobiDBLite consensus disorder prediction 195 212 - -
Viun1g02780 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Viun1g02780 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Viun1g02780 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Viun1g02780 212 MobiDBLite consensus disorder prediction 57 85 - -
Viun1g02780 212 MobiDBLite consensus disorder prediction 144 184 - -
Viun1g02780 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Viun1g02780 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Viun1g02780 212 FunFam Ribosomal protein L19 57 194 - -
Viun1g02780 212 MobiDBLite consensus disorder prediction 144 212 - -
Viun1g02780 212 Gene3D - 57 191 - -
Viun1g02780 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Viun1g02780 212 FunFam Ribosomal protein L19 1 56 - -
Viun1g02780 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Viun1g02780 212 MobiDBLite consensus disorder prediction 57 79 - -
Viun1g02780 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02780 Viun-Chr1 37170544 37172739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02780 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.434 8.63e-129 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02780 K02885 - gmx:100527501 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02780 1 37170544 37172739 Viun1g02780 1 37170544 37172739 ECH