Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02775 ATGCTACCTCACATACCCTGCATTCTCTCCGCGGTTCATCTTCTACTCCTTTTTACAGTAACCCAGTTCAGCATCACCGCAGAAGCAACCAGAGCTCTGGAACAAACCCAGCTCCATTTCCATGTAGCAAACTCCACATGCGAGGGAACACTCTACCCGGACCTCTGTGTCTCAACCCTTACCTCTTTCCCGGATCTCACCTCAAAAACCGTACCAGAAATGATATGTTCTGTCGTGAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCAGCGGTCTCCGAAAGAAGCTCCCGGGTCTCAACAAACTGGAACAGCGAGCTCTCGACGACTGCCTCGACCTCTTCGACGAAACCGTGGAGGAGCTCAAAACCACCGTGGCGGATCTCTCCCAAACCACAATAGGGTCGAAGCGTTACCACGACTCGCAGACTCTCTTAAGCGGCGCCATGACCAACCTCTACACGTGTCTGGATGGCTTTGCTTACAGCAAAGGGCACGTGAGGGAGAAGATTGAAGAGGGGCTGCTGGAGATTTCGCATCTCGTGAGCAACTCCTTGGCCATGCTGAAGAAAGTGCCGGAAAAGAAGAAACAGTCTAAGAACGAGATTTTTCCCGAATATGGAAAGATGAAAGACGGGTTCCCGTCGTGGGTTTCCCCTAAAGACCGGAAGTTGCTTCAAGCTCCGGTGAATGAAACGAAGTTCAACCTTGTTGTGGCCAAAGATGGCACTGGCAACTTCACCACTATATCTGAAGCAGTGGCTGCAGCTCCAAACTCCAGCGCAACCAGATTTGTGATACACATAAAAGCTGGGGCATACTTCGAGAACGTGGAGGTAATAAGGAGGAAGACGAATCTGATGTGGGTCGGAGATGGAATTGGAAAGACTGTTGTGAAGGCAAGCAGGAACGTTGTTGATGGCTGGACTACTTTCCAATCTGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAAGGTATAACCTTTGAGAACTCGGCCGGGCCCAGCAAACACCAAGCGGTGGCTCTAAGAAGCGGTGCAGACTTCTCGGCCTTCTACCAGTGCAGCTTTGTGGCCTACCAAGACACGCTCTACGTCCACTCTCTGCGTCAATTCTACCGCGAATGCGACGTTTATGGAACCGTGGACTTCATCTTTGGTAACGCTGCGGCGGTGCTCCAGAACTGCAACTTGTACGCGCGCAAGCCTAATCCAAACCAGAGGAACCTGTTCACCGCACAAGGCAGAGAAGACCCGAACCAAAACACGGGTATTTCCATCATCAACTGCAAGGTTGCAGCAGCTGCTGATTTGATCCCTGTGAAATCTGAGTTCAGGAATTACCTGGGTCGTCCCTGGAAGAAGTATTCGAGGACGGTTTATCTGAATTCTTTGATGGAGGATCTGATAGACCCTGCAGGGTGGTTGGAATGGGATGGGAACTTTGCATTGGATACTTTGTATTATGGAGAGTACAACAATAGAGGTCCTGGTGCAAATACAAGTCGCAGAGTTACGTGGCCTGGTTATAGGGTCATCACCAACTCCACCGAGGCAAGCCAGTTCACCGTTGCAAATTTCATTCAAGGCAATGAATGGTTGAACTCCTATGGCATTCCATTCTTCTCTGGCTTGAGTTGA 1656 0.5036 MLPHIPCILSAVHLLLLFTVTQFSITAEATRALEQTQLHFHVANSTCEGTLYPDLCVSTLTSFPDLTSKTVPEMICSVVNHTIYEVTLSSSNCSGLRKKLPGLNKLEQRALDDCLDLFDETVEELKTTVADLSQTTIGSKRYHDSQTLLSGAMTNLYTCLDGFAYSKGHVREKIEEGLLEISHLVSNSLAMLKKVPEKKKQSKNEIFPEYGKMKDGFPSWVSPKDRKLLQAPVNETKFNLVVAKDGTGNFTTISEAVAAAPNSSATRFVIHIKAGAYFENVEVIRRKTNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNPNQRNLFTAQGREDPNQNTGISIINCKVAAAADLIPVKSEFRNYLGRPWKKYSRTVYLNSLMEDLIDPAGWLEWDGNFALDTLYYGEYNNRGPGANTSRRVTWPGYRVITNSTEASQFTVANFIQGNEWLNSYGIPFFSGLS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02775 551 CDD PMEI-like_3 45 196 - -
Viun1g02775 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 195 IPR035513 -
Viun1g02775 551 PANTHER PECTINESTERASE 20 540 - -
Viun1g02775 551 SMART PMEI_2 38 191 IPR006501 GO:0004857
Viun1g02775 551 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Viun1g02775 551 Gene3D - 233 550 IPR012334 -
Viun1g02775 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 196 IPR035513 -
Viun1g02775 551 NCBIfam pectinesterase inhibitor domain 14 194 IPR006501 GO:0004857
Viun1g02775 551 FunFam Pectinesterase 233 550 - -
Viun1g02775 551 Pfam Pectinesterase 239 536 IPR000070 GO:0030599|GO:0042545
Viun1g02775 551 Pfam Plant invertase/pectin methylesterase inhibitor 44 191 IPR006501 GO:0004857
Viun1g02775 551 SUPERFAMILY Pectin lyase-like 237 549 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02775 Viun-Chr1 37130563 37133972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02775 68 550 Carbohydrate Esterase AT4G02300 56.504 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02775 K01051 - gmx:100813592 956.436