Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02773 ATGGCTATGGCTTTTAACAGCTTTTACGCTCTCACACTCTTCGTTTCCCTTCTGCTATCCTTCTTCACCTCGATTTCCATAGCTGATAATAGCCATGCAGTTGTTCCACCAGAAACCCTATGCCACTCGACCTTGGACCCTTCTTACTGCAAATTTGTTCTTGCTAATCAAAATGGCAGCATATATGAGTATTGCCAAATTTCTGTTCGAAAATCCCTGTCCCAGTCTCGTAAGTTCTTGAACACGATGTACTCATATCTTCAAAATCCCTCCTCTCTCTCCCAACCCACAATCCTCGCTCTTGAAGATTGCCAAATACTTTCTGAACTAAACTTTGAATACTTATCGACGACACTTGACACTGTTGATAAAGCTAAGGATGTTCTTCCCACCTCTCAAACAGACGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCAGCAAACTTGTTTAGACGGTCTTCAAACCTCGGCTTCAGATCCAAGAGTGAAGAATGGTCTTTTTTCCCAACTCTTGGATGATATGAAGCTTAACAGTGTCTCACTTTATTTGTTCACCAAGGCTTGGGTTCCTGAGAACAGAATATGGCAACCCCATGGAGCCATCCAGAATGATGGTATGTCGAACAAAGTTCGCGCCATTTATGATTCTGCGAAAGGTCAGGGGAGAAAACTACTACAAACATCGGATGACAGTGAAAGCGTTTTGGTGAGTGACATTGTGGTGGTTAGTAAAGATGGAACTGGAAACTTTACCACCATAAACGATGCCATAGCTGCAGCACCAAATAACACAGCTGTTACCGATGGCTACTTCATTATTGTTATCAGTGAGGGTATATATCAAGAGTATGTATCCATAGCCAAAAACAAGAAGTTCTTGATGTTAATTGGAAATGGAATCAATCGGACAATTATAACTGGCGATCACAACGTTGTGGATGGCTCTACAACATTCAACTCAGCCACATTTGCTGTGGTAGGACAAGGATTCGTAGCTGTGAACATAACATTCCGCAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCACCTTCTATAGCTGTAGTTTCGAAGGGTACCAAGACACTTTATACACTCATTCTCTGAGACAGTTTTATCGAGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAATGCAGCTGTTGTTTTGCAAAACTGCAACATGTATCCTCGCCTTCCATTGAGTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAACCAAAACACAGGCATTTCCATACAAAATGCCACCATAAAAGCTGCACAGGATTTGGCTCCAAAGGTTGGAACTGTGGAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACTGTTTATATACGGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGAATGGGAGTTTCGCACTCAGCACATTGTACTACGCAGAATATGATAACATGGGTCCTGGTTCAAACACTGCAAACCGAGTTAATTGGTCTGGGTTTCATGTTATTGATGCCACTGATGCAGCCAATTTTACTGTCTCTAGCTTCTTGGATGGGGATGATTGGGTGCCTCGAACCAGCATTCCGTACCAGACATCTTTGTAA 1665 0.4264 MAMAFNSFYALTLFVSLLLSFFTSISIADNSHAVVPPETLCHSTLDPSYCKFVLANQNGSIYEYCQISVRKSLSQSRKFLNTMYSYLQNPSSLSQPTILALEDCQILSELNFEYLSTTLDTVDKAKDVLPTSQTDDVHTLLSAVLTNQQTCLDGLQTSASDPRVKNGLFSQLLDDMKLNSVSLYLFTKAWVPENRIWQPHGAIQNDGMSNKVRAIYDSAKGQGRKLLQTSDDSESVLVSDIVVVSKDGTGNFTTINDAIAAAPNNTAVTDGYFIIVISEGIYQEYVSIAKNKKFLMLIGNGINRTIITGDHNVVDGSTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPLSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPKVGTVETYLGRPWKEYSRTVYIRSFMDSLIAPAGWHEWNGSFALSTLYYAEYDNMGPGSNTANRVNWSGFHVIDATDAANFTVSSFLDGDDWVPRTSIPYQTSL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02773 554 FunFam Pectinesterase 38 188 - -
Viun1g02773 554 PANTHER PECTINESTERASE 24 546 - -
Viun1g02773 554 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Viun1g02773 554 Pfam Pectinesterase 242 540 IPR000070 GO:0030599|GO:0042545
Viun1g02773 554 SUPERFAMILY Pectin lyase-like 238 550 IPR011050 -
Viun1g02773 554 CDD PMEI-like_3 39 190 - -
Viun1g02773 554 SMART PMEI_2 32 185 IPR006501 GO:0004857
Viun1g02773 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Viun1g02773 554 NCBIfam pectinesterase inhibitor domain 7 185 IPR006501 GO:0004857
Viun1g02773 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
Viun1g02773 554 Pfam Plant invertase/pectin methylesterase inhibitor 38 167 IPR006501 GO:0004857
Viun1g02773 554 Gene3D - 236 554 IPR012334 -
Viun1g02773 554 FunFam Pectinesterase 235 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02773 Viun-Chr1 37115084 37116839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02773 13 554 Carbohydrate Esterase AT1G02810 55.382 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02773 K01051 - gmx:100792847 935.25