Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02769 ATGATCATCAAGCGGAGCATGAAAACTGAAATTCCAGAGCGGAAATGGTTCAAGTCAGAGAAACGAGGGAATTTGGCGATTCAGAAGAAAAGGAGAACAAATGTTTTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGGCGCCGTCCAATTCAAATGAAATGGACTCCAATGGCACAATTCAAAACCTGCTACCGCAATCAGAAGAAGGGGTTCGTGCCATTCAACCCCAGTCTTTCAGAGGTCGCGCCAAGAAACTTCCTCGCAGGTTCAATGATTCTGTTCTTTACGAACGATTAGGGTCTGAAAACTGGAGTAACGCTTTACAAGACGTTGCTGCCATGAGTAGTGAGCGAGATTCTCCTTGTTTTCCACCATGTTCTGCTGAGCTAAGAGATTCTGAGTACTCGGTAAAGACTGTTAAAAAGACTGTTAGTGGAGGTCGTTCTTTGTTTGTTAAAGAAAAGAGCGATGATGTGCCTGGACTAAGTACCGAGGTTGAACGTGTGAATGGAAGTGGCAAAAGAAAGAGGGATGCTTGCAGATTGGAGGATTTTTGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAAAGGGAATCGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCCCCTTCTGGGAATTCATGGACAGATTCCAGGAGCAGATCAAACTGTACAAAAATAAAGCAAGTGACTTTCACAAGGCAATGGAAGAGGCAATGTTGGCTGAAGATGGCATTTTGGACTTACACTTGGAAGCTGAGCAGAATTTGGTGGCTGCGGATTCCTATAAAGACCAGGGTACACTATCTTGTGTTGGTTGTGGTTTGTTGTTGCCATGCAAAACCATAAAGAAGATTAAGGATTCAAGTAGTGCTCCTCAGCACTATTGCAAGCCCTGTGCAAAGTTAATTAAATCGAAACAATATTGTGGGATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCTCATGCACAGAAGTCAGAAAAGATATCAATGGAGAATAGCCAAGAACTTGTATTACCTGAAAATATTGCTGTGGTATGCAATGACCTGGAAGGAATCTATATTCCAAAGCTTCATTTGGTTATGTGCAATTGCGGCTTGTGTAGTTCAAGGAAGTATACACTCACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATGGATCACTGACCACAAGACCCCAAGGGGAATTCCCCCGCAGTTAGATCAGCAGCAAATTCTCTCCCTTTTACAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTTCACCAAGAATGCTACGGGGCAAATAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTCAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGGCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACGTGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACTACAACAACGAAGATGCTAACATACTGTGCAATTCACAGGGTCCCAAACCCAGATTCAGGACTGGTTGTACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCAAAATCACCCGAGGTGCTTCAGGGGATCACGTCTGGCTTCAACAAAGAATGTAGAACTTCTTGAACCTTCAAACTCTGAAATTCATGAGATTGATCCACTGTCTGCTGCCCGCATTCGTGTATACGAAAGGTCTTCCAATAAGAATGCTGCGGCTACAATTCACTTGCTTGGGGGGCCAAAGCTTCACTCTTTAAGTGAAATAACTCAATTGAATGGTATCAAGGTTGCTCAAGCTCTTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAGCCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGATGAGGAGAATCGGATTGTGCTTATTGCGAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTATTTGTTCGATGTAGATGAGCCAGATGAACTGAAGGTTCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG 2901 0.425 MIIKRSMKTEIPERKWFKSEKRGNLAIQKKRRTNVFFSAEGVSGSSEAPSNSNEMDSNGTIQNLLPQSEEGVRAIQPQSFRGRAKKLPRRFNDSVLYERLGSENWSNALQDVAAMSSERDSPCFPPCSAELRDSEYSVKTVKKTVSGGRSLFVKEKSDDVPGLSTEVERVNGSGKRKRDACRLEDFCLGDIVWAKCGKTHPAWPAVVIDPFFRAPKSVINCCVPSALCVMFFGYSKKGNRRDYAWVKQGMIFPFWEFMDRFQEQIKLYKNKASDFHKAMEEAMLAEDGILDLHLEAEQNLVAADSYKDQGTLSCVGCGLLLPCKTIKKIKDSSSAPQHYCKPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSEKISMENSQELVLPENIAVVCNDLEGIYIPKLHLVMCNCGLCSSRKYTLTEWERHAGCKAKKWKHSVKVESTMQPLIKWITDHKTPRGIPPQLDQQQILSLLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCQMAVHQECYGANNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQRHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKMLTYCAIHRVPNPDSGLVVHTPMEVFSPTISLQNHPRCFRGSRLASTKNVELLEPSNSEIHEIDPLSAARIRVYERSSNKNAAATIHLLGGPKLHSLSEITQLNGIKVAQALEFSSLKERLHHLRKTESQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSDEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02769 966 ProSiteProfiles Zinc finger PHD-type profile. 534 585 IPR019787 -
Viun1g02769 966 Pfam PWWP domain 189 285 IPR000313 -
Viun1g02769 966 FunFam Histone-lysine N-methyltransferase 586 705 - -
Viun1g02769 966 CDD PWWP_AtATX3-like 189 288 - -
Viun1g02769 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 409 IPR013083 -
Viun1g02769 966 Gene3D - 180 287 - -
Viun1g02769 966 Pfam PHD-finger 549 583 - -
Viun1g02769 966 SUPERFAMILY SET domain 823 962 IPR046341 -
Viun1g02769 966 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 21 966 IPR025780 -
Viun1g02769 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 585 IPR013083 -
Viun1g02769 966 PANTHER PHD FINGER PROTEINS 52 382 - -
Viun1g02769 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 704 IPR013083 -
Viun1g02769 966 CDD SET_SETD1-like 813 962 - -
Viun1g02769 966 ProSiteProfiles PWWP domain profile. 188 257 IPR000313 -
Viun1g02769 966 SUPERFAMILY FYVE/PHD zinc finger 535 599 IPR011011 -
Viun1g02769 966 Gene3D SET domain 809 966 IPR046341 -
Viun1g02769 966 ProSiteProfiles Extended PHD (ePHD) domain profile. 588 703 IPR034732 -
Viun1g02769 966 Pfam SET domain 835 940 IPR001214 GO:0005515
Viun1g02769 966 FunFam Histone-lysine N-methyltransferase 801 966 - -
Viun1g02769 966 SUPERFAMILY FYVE/PHD zinc finger 350 411 IPR011011 -
Viun1g02769 966 ProSiteProfiles SET domain profile. 824 941 IPR001214 GO:0005515
Viun1g02769 966 CDD PHD_ATX3_4_5_like 536 582 IPR042011 -
Viun1g02769 966 Pfam PHD-finger 352 405 IPR019787 -
Viun1g02769 966 SMART PostSET_3 950 966 IPR003616 -
Viun1g02769 966 ProSiteProfiles Zinc finger PHD-type profile. 350 406 IPR019787 -
Viun1g02769 966 CDD PHD_TCF19_like 353 403 - -
Viun1g02769 966 Pfam PHD-zinc-finger like domain 590 702 - -
Viun1g02769 966 SMART set_7 824 947 IPR001214 GO:0005515
Viun1g02769 966 SMART PHD_3 647 703 IPR001965 -
Viun1g02769 966 SMART PHD_3 352 404 IPR001965 -
Viun1g02769 966 SMART PHD_3 536 583 IPR001965 -
Viun1g02769 966 SUPERFAMILY Tudor/PWWP/MBT 185 287 - -
Viun1g02769 966 ProSitePatterns Zinc finger PHD-type signature. 537 582 IPR019786 -
Viun1g02769 966 ProSiteProfiles Post-SET domain profile. 950 966 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02769 Viun-Chr1 37075314 37083772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02769 537 702 C2H2 Transcription Factor Family AT3G14740 34.857 9.41e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun1g02769 zf-HC5HC2H_2 9.8e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02769 - - gmx:100785063 1440.25