Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun1g02768 | ATGATCATCAAGCGGAGCATGAAAACTGAAATTCCAGAGCGGAAATGGTTCAAGTCAGAGAAACGAGGGAATTTGGCGATTCAGAAGAAAAGGAGAACAAATGTTTTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGGCGCCGTCCAATTCAAATGAAATGGACTCCAATGGCACAATTCAAAACCTGCTACCGCAATCAGAAGAAGGGGTTCGTGCCATTCAACCCCAGTCTTTCAGAGGTCGCGCCAAGAAACTTCCTCGCAGGTTCAATGATTCTGTTCTTTACGAACGATTAGGGTCTGAAAACTGGAGTAACGCTTTACAAGACGTTGCTGCCATGAGTAGTGAGCGAGATTCTCCTTGTTTTCCACCATGTTCTGCTGAGCTAAGAGATTCTGAGTACTCGGTAAAGACTGTTAAAAAGACTGTTAGTGGAGGTCGTTCTTTGTTTGTTAAAGAAAAGAGCGATGATGTGCCTGGACTAAGTACCGAGGTTGAACGTGTGAATGGAAGTGGCAAAAGAAAGAGGGATGCTTGCAGATTGGAGGATTTTTGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAAAGGGAATCGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCCCCTTCTGGGAATTCATGGACAGATTCCAGGAGCAGATCAAACTGTACAAAAATAAAGCAAGTGACTTTCACAAGGCAATGGAAGAGGCAATGTTGGCTGAAGATGGCATTTTGGACTTACACTTGGAAGCTGAGCAGAATTTGGTGGCTGCGGATTCCTATAAAGACCAGGGTACACTATCTTGTGTTGGTTGTGGTTTGTTGTTGCCATGCAAAACCATAAAGAAGATTAAGGATTCAAGTAGTGCTCCTCAGCACTATTGCAAGCCCTGTGCAAAGTTAATTAAATCGAAACAATATTGTGGGATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCTCATGCACAGAAGTCAGAAAAGATATCAATGGAGAATAGCCAAGAACTTGTATTACCTGAAAATATTGCTGTGGTATGCAATGACCTGGAAGGAATCTATATTCCAAAGCTTCATTTGGTTATGTGCAATTGCGGCTTGTGTAGTTCAAGGAAGTATACACTCACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATGGATCACTGACCACAAGACCCCAAGGGGAATTCCCCCGCAGTTAGATCAGCAGCAAATTCTCTCCCTTTTACAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTTCACCAAGAATGCTACGGGGCAAATAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTCAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGGCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACGTGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACTACAACAACGAAGATGCTAACATACTGTGCAATTCACAGGGTCCCAAACCCAGATTCAGGACTGGTTGTACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCAAAATCACCCGAGGTGCTTCAGGGGATCACGTCTGGCTTCAACAAAGAATGTAGAACTTCTTGAACCTTCAAACTCTGAAATTCATGAGATTGATCCACTGTCTGCTGCCCGCATTCGTGTATACGAAAGGTCTTCCAATAAGAAGAATGCTGCGGCTACAATTCACTTGCTTGGGGGGCCAAAGCTTCACTCTTTAAGTGAAATAACTCAATTGAATGGTATCAAGGTTGCTCAAGCTCTTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAGCCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGATGAGGAGAATCGGATTGTGCTTATTGCGAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTATTTGTTCGATGTAGATGAGCCAGATGAACTGAAGGTTCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG | 2904 | 0.4249 | MIIKRSMKTEIPERKWFKSEKRGNLAIQKKRRTNVFFSAEGVSGSSEAPSNSNEMDSNGTIQNLLPQSEEGVRAIQPQSFRGRAKKLPRRFNDSVLYERLGSENWSNALQDVAAMSSERDSPCFPPCSAELRDSEYSVKTVKKTVSGGRSLFVKEKSDDVPGLSTEVERVNGSGKRKRDACRLEDFCLGDIVWAKCGKTHPAWPAVVIDPFFRAPKSVINCCVPSALCVMFFGYSKKGNRRDYAWVKQGMIFPFWEFMDRFQEQIKLYKNKASDFHKAMEEAMLAEDGILDLHLEAEQNLVAADSYKDQGTLSCVGCGLLLPCKTIKKIKDSSSAPQHYCKPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSEKISMENSQELVLPENIAVVCNDLEGIYIPKLHLVMCNCGLCSSRKYTLTEWERHAGCKAKKWKHSVKVESTMQPLIKWITDHKTPRGIPPQLDQQQILSLLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCQMAVHQECYGANNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQRHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKMLTYCAIHRVPNPDSGLVVHTPMEVFSPTISLQNHPRCFRGSRLASTKNVELLEPSNSEIHEIDPLSAARIRVYERSSNKKNAAATIHLLGGPKLHSLSEITQLNGIKVAQALEFSSLKERLHHLRKTESQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSDEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN | 967 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun1g02768 | 967 | PANTHER | PHD FINGER PROTEINS | 52 | 382 | - | - | |
| Viun1g02768 | 967 | ProSiteProfiles | Zinc finger PHD-type profile. | 534 | 585 | IPR019787 | - | |
| Viun1g02768 | 967 | FunFam | Histone-lysine N-methyltransferase | 586 | 705 | - | - | |
| Viun1g02768 | 967 | CDD | PWWP_AtATX3-like | 189 | 288 | - | - | |
| Viun1g02768 | 967 | FunFam | Histone-lysine N-methyltransferase | 802 | 967 | - | - | |
| Viun1g02768 | 967 | SUPERFAMILY | SET domain | 824 | 963 | IPR046341 | - | |
| Viun1g02768 | 967 | Gene3D | - | 180 | 287 | - | - | |
| Viun1g02768 | 967 | Pfam | PHD-finger | 549 | 583 | - | - | |
| Viun1g02768 | 967 | Pfam | PWWP domain | 189 | 285 | IPR000313 | - | |
| Viun1g02768 | 967 | SMART | PostSET_3 | 951 | 967 | IPR003616 | - | |
| Viun1g02768 | 967 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 531 | 585 | IPR013083 | - | |
| Viun1g02768 | 967 | ProSiteProfiles | SET domain profile. | 825 | 942 | IPR001214 | GO:0005515 | |
| Viun1g02768 | 967 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 586 | 704 | IPR013083 | - | |
| Viun1g02768 | 967 | SMART | set_7 | 825 | 948 | IPR001214 | GO:0005515 | |
| Viun1g02768 | 967 | ProSiteProfiles | PWWP domain profile. | 188 | 257 | IPR000313 | - | |
| Viun1g02768 | 967 | SUPERFAMILY | FYVE/PHD zinc finger | 535 | 599 | IPR011011 | - | |
| Viun1g02768 | 967 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 588 | 703 | IPR034732 | - | |
| Viun1g02768 | 967 | ProSiteProfiles | Post-SET domain profile. | 951 | 967 | IPR003616 | - | |
| Viun1g02768 | 967 | SUPERFAMILY | FYVE/PHD zinc finger | 350 | 411 | IPR011011 | - | |
| Viun1g02768 | 967 | CDD | SET_SETD1-like | 814 | 963 | - | - | |
| Viun1g02768 | 967 | CDD | PHD_ATX3_4_5_like | 536 | 582 | IPR042011 | - | |
| Viun1g02768 | 967 | Pfam | PHD-finger | 352 | 405 | IPR019787 | - | |
| Viun1g02768 | 967 | ProSiteProfiles | Zinc finger PHD-type profile. | 350 | 406 | IPR019787 | - | |
| Viun1g02768 | 967 | CDD | PHD_TCF19_like | 353 | 403 | - | - | |
| Viun1g02768 | 967 | Pfam | PHD-zinc-finger like domain | 590 | 702 | - | - | |
| Viun1g02768 | 967 | Pfam | SET domain | 836 | 941 | IPR001214 | GO:0005515 | |
| Viun1g02768 | 967 | Gene3D | SET domain | 810 | 967 | IPR046341 | - | |
| Viun1g02768 | 967 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 21 | 967 | IPR025780 | - | |
| Viun1g02768 | 967 | SMART | PHD_3 | 647 | 703 | IPR001965 | - | |
| Viun1g02768 | 967 | SMART | PHD_3 | 536 | 583 | IPR001965 | - | |
| Viun1g02768 | 967 | SMART | PHD_3 | 352 | 404 | IPR001965 | - | |
| Viun1g02768 | 967 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 409 | IPR013083 | - | |
| Viun1g02768 | 967 | ProSitePatterns | Zinc finger PHD-type signature. | 537 | 582 | IPR019786 | - | |
| Viun1g02768 | 967 | SUPERFAMILY | Tudor/PWWP/MBT | 185 | 287 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun1g02768 | Viun-Chr1 | 37075314 | 37083772 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun1g02768 | 537 | 702 | C2H2 Transcription Factor Family | AT3G14740 | 34.857 | 9.42e-23 | 99.0 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Viun1g02768 | zf-HC5HC2H_2 | 9.8e-29 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun1g02768 | - | - | gmx:100785063 | 1446.8 |