Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02767 ATGACTATGGTGCCAGACATTGAAACCAAGTACGCACATAACGGCAAGGTTATGGTGGGCACTGCCATTCTCCTCTTCCTTCTCATAATCCTCATCATTCTCTTCAACGCCTACGTCCGCTTCTGCCGCCGTCGCCGCCGCGATTTCTTGTCCCATTCCCTTCCGACCACTGCCTCCGCCGAGCCCCGTCTCGATCCTTCCGTCATCAAGTCCCTTCCCACTTTTTTCTTCTCCGCCGCCGTCCACCGCTCTCTCCAGGACTGCGCCGTGTGCCTGTCGGAGTTCGCCGACGGTGATAAAGTCCGCACGCTCCCCAACTGTAAGCATGGTTTCCACACCCACTGCATCGACGCATGGTTTGCCTCTCACTCCACGTGTCCTCTGTGCCGAACCCCGGCCCAACCGGCCAAGGTTTGCTCTGACGCTGAACCCGGTTCGGTTCCGGTTTCCGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCTATTGCGTGTCCGAGAAAGGCGTTGGATGTAG 519 0.58 MTMVPDIETKYAHNGKVMVGTAILLFLLIILIILFNAYVRFCRRRRRDFLSHSLPTTASAEPRLDPSVIKSLPTFFFSAAVHRSLQDCAVCLSEFADGDKVRTLPNCKHGFHTHCIDAWFASHSTCPLCRTPAQPAKVCSDAEPGSVPVSEADEGCSSSLGPLLRVRERRWM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02767 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 145 - -
Viun1g02767 172 FunFam E3 ubiquitin-protein ligase ATL6 53 136 - -
Viun1g02767 172 SUPERFAMILY RING/U-box 68 135 - -
Viun1g02767 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 136 IPR013083 -
Viun1g02767 172 SMART ring_2 88 129 IPR001841 -
Viun1g02767 172 CDD RING-H2_EL5-like 87 130 - -
Viun1g02767 172 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Viun1g02767 172 Pfam Ring finger domain 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02767 Viun-Chr1 37067323 37068171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02767 11 131 Rapid Response to Elicitors AT3G16720 43.165 7.28e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02767 - - pvu:PHAVU_001G208400g 281.952