Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02746 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAAATCTTGAAGAGGTGCAGAAAAAACTCTCCATCCCAGAAGCCCCTTAATGCACCCCTTGCCGCCAAAACCTGCCCAGACCAATGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGATGTAGTGGGGTGTTTTAATCAGCGTGCGCAGAAATTATTGGAGCTGCATCTTGCTTCTGGCTTCAGAAAGTACTTTTTCTGGATCAAAGGCAGATTGCAAGGAAACCATTCTGCTCTGATTCAAGAAGGCAAAGATCTTGTCACTTACGCACTCATAAATGCTATTGCAATTAGGAAAATACTCAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCGCAGGTCCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTCATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTAAAGTCAATGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACATTTAAGGATGAGAAACCGTCCCTTACTTGTGAGCTCTTTGATTCTATCAAATTGGATGTTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGCGGCCACATATTCTGCTATATTTGTGCATGCTCGGCTGCTTCAGTATCTATTGTTGACGGACTTAAGTCTGCAGATTCTAAAAAGAAATGTCCTCTATGCCGCAAGAACGCTGTATATGAAGGTGCTGTGCACTTGGAAGAACTGAATATTCTGTTAGGCAGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTGAGACTGAGAGGGTGGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGTGTCTAA 975 0.4349 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKRCRKNSPSQKPLNAPLAAKTCPDQCPVCDGTFFPSLLNEMSDVVGCFNQRAQKLLELHLASGFRKYFFWIKGRLQGNHSALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSMKAHALFDGCSLTFKDEKPSLTCELFDSIKLDVDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKSADSKKKCPLCRKNAVYEGAVHLEELNILLGRSCQEYWEQRLETERVERIKQIKEHWDSQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02746 324 CDD SPX_BAH1-like 2 147 - -
Viun1g02746 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Viun1g02746 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 322 IPR013083 -
Viun1g02746 324 SMART ring_2 220 268 IPR001841 -
Viun1g02746 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Viun1g02746 324 SUPERFAMILY RING/U-box 213 273 - -
Viun1g02746 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Viun1g02746 324 CDD RING-HC_BAH1-like 210 283 - -
Viun1g02746 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Viun1g02746 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02746 Viun-Chr1 36965427 36968475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02746 217 272 C3H Transcription Factor Family AT4G28270 39.344 3.45e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02746 K16275 - gmx:100787904 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02746 1 36965427 36968475 Viun1g02746 1 36965427 36968475 ECH