Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02721 ATGAAGAGGAGAAGCAGCAAGATTGGAAAGAAGCAGAGCAGGAAGATGAAGGGCGCGTTGAGTAACAGCACCACCAGGCACTTGCAGCTTCAGCTAGGTCAAGTCTCCCTCATTCCTCTCAACCAACCATCTTCTATCACTTCTTCCGCGGTTTCTCGCTTCCAGAACCTTCTCGATTCCGAACCTCCCAACGCGTCTTCATCGCGCGTTCCGCTCACCGACGATGCCGTCGCCGTCGTCGACGACAGAGACTGTATTCTCAGCCAGGACTTCTTCTGCACTCCGGATTACATCACTCCGGATAATCCGCATTCTTTGAATGGCTTTGATTGCGATATGGATACTCCCTGCCCCAAATCGCCTGAGAAGCTTAACACTACGAAGAGCAAGAGATGCCGACCAGATGTTATGTCGGTTCGACCTCTCAGCCCCACCTTTTCTGGTGACCATCAGCCAGCTGTGGAACTGGGAAAAGATTCTGTTGCAGACGAATTTGCTTTTGAGAAAACAATAGCAGCTGCTAAACCAAATGGTCAGAATTACGTGTCCCAATCTGCAATTGCATTGCGTTTCGGGGTTATGCCTCCTCCTTGCTTTAGGAACCCATTTTTAAATAATGTTACAGACGAGGAGATTGATCCTTTTCGAAACCAAAGATTGAAATGTGCAGGCCTCTTCCCTGCAATCAGTGGTGGTGACGGGATTCCACGCTATCGTTCTGAGTTTCATGAAATTGAGCTAATTGGTGGAGGGAACTTTAGTCATGTTTTCAAAGTATTAAGACGACTAGATGGATGTTTGTATGCTGTTAAACGGAGCATCAGACCGTTACGCCTTGAAACAGAAAGGACAAAAGCTATGATGGAAGTTCAAGCTTTGGCAGCCCTAGGTTTGCATCAGAACATTGTGGGTTACTATTCTTCATGGTTTGAAAATGAACAGTTGTACATTCAGACGGAGTTATGCGATCACAGTTTATCCATAAGAAAATGCCCAGAGGCATTTACAGAAGCACAAGTGTTAGATGCCTTATTTCAGATTGCCAATGCTCTGCGATTTATTCACGAGAAGGGAATGGCTCATCTAGATGTGAAGCCCAATAATATTTATGTGAAGAGTGGTGTTTATAAACTCGGTGATTTTGGATGTGCGACTCTTCTTGATGGTAGCCTCCCAATTGAGGAGGGTGACGCACGTTATATGCCCCAGGAAATTCTTAATGAAAATTATGATCATCTAGACAAGGTTGATATCTTCTCCTTGGGAGCTTCTATTTATGAACTTATTCGAAGATTGCCTTTGCCAGAATCAGGATGTCAATATTTTAACCTCAAGGAAGGAAAGTTTCCCCTCTTGCCTGGTCATTCGTTGCATATTCAAAACTTGCTCAAGGTCATGATGGACCCTGATCCGGTTAAGCGGCCTTCTGCTAGAGAATTGGTAGAAAACCCAATTTTTTGTAAGAAGATTCAAAGAACTGCGTGA 1485 0.4471 MKRRSSKIGKKQSRKMKGALSNSTTRHLQLQLGQVSLIPLNQPSSITSSAVSRFQNLLDSEPPNASSSRVPLTDDAVAVVDDRDCILSQDFFCTPDYITPDNPHSLNGFDCDMDTPCPKSPEKLNTTKSKRCRPDVMSVRPLSPTFSGDHQPAVELGKDSVADEFAFEKTIAAAKPNGQNYVSQSAIALRFGVMPPPCFRNPFLNNVTDEEIDPFRNQRLKCAGLFPAISGGDGIPRYRSEFHEIELIGGGNFSHVFKVLRRLDGCLYAVKRSIRPLRLETERTKAMMEVQALAALGLHQNIVGYYSSWFENEQLYIQTELCDHSLSIRKCPEAFTEAQVLDALFQIANALRFIHEKGMAHLDVKPNNIYVKSGVYKLGDFGCATLLDGSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGASIYELIRRLPLPESGCQYFNLKEGKFPLLPGHSLHIQNLLKVMMDPDPVKRPSARELVENPIFCKKIQRTA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02721 494 ProSiteProfiles Protein kinase domain profile. 242 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02721 494 SUPERFAMILY Protein kinase-like (PK-like) 233 488 IPR011009 -
Viun1g02721 494 Gene3D Phosphorylase Kinase; domain 1 234 320 - -
Viun1g02721 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Viun1g02721 494 SMART serkin_6 242 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02721 494 Pfam Protein kinase domain 242 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02721 494 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g02721 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 118 487 - -
Viun1g02721 494 ProSitePatterns Protein kinases ATP-binding region signature. 248 271 IPR017441 GO:0005524
Viun1g02721 494 Gene3D Transferase(Phosphotransferase) domain 1 321 491 - -
Viun1g02721 494 FunFam Wee1-like protein kinase 321 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02721 Viun-Chr1 36839053 36842408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02721 11 486 Core Cell Cycle Gene Families AT1G02970 58.420 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Viun1g02721 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02721 K06632 - gmx:547742 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02721 1 36839053 36842408 Viun1g02721 1 36839053 36842408 ECH