Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02718 ATGTCAAATGTTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCTTCAAGAAACCCAACACCAGCAGCCACAAAACCAGCTCCATGACTCTACTTCAGGACCTTCTGCTGCTTGCAATACCAATGCTTCAACCAATCAACAAACCAAGAAGAAAAGAAACCTCCCAGGAACCCCAGACCCCAGTGCTGAAGTTGTTGCTTTATCACCAACCACATTGATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGCTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCACCGAGGTGAAGAAACGTGTGTATGTTTGCCCTGAGCCATCATGCGTGCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCACTATAGCCGCAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAGAGATATGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCTTTCTGTGATGCATTAACTGAGGAAAACAACAGAGTGAACCAGGGTCTGACAAGTGGCATGCCACCAAACCTGCAGAGTCAAATACCGGATCTTATGTCTACCATGCCTCTGAACACTAGTCCCAACACAGTATATGACCCTAAGAACCCACTGAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCTACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGTCTCCCTCTTCTTCCAGCCTCCAACTGGGTTCCAACACCTCATCAAGCTTCAATTACTTGCAAGACAACAAAAACGGAGCACTAATTGCTGCCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATACCATCAACTCCCCCATCATGCAAAAAGGCTTTGTTAGTAGCACTTCTGCTCCTGATCATGTTTCTTCCACTAGGCCACCGTATTCCGGTGCCATGCTGCAGCACAACAACTCCTACGACCATTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAACCAGTTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACTCCAACACTGCCGGGTCTGCTATGAACGAGGTGGGAATGTTCAGCCAAATGCCCCTGGGGAGTGATCACAACCACAACACTGGATTGATGAAGAATGTTGAACAAGAGGTTAGTAATTGTTCTGGTTTGATCCATGGAAGAGATGTGGTTGAAGGTAACCCGATGCAGCCATCAAGGTTTGGAGGCAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCTAGAGTCATGAACCATTTTCATCACCATTTTCCACACCAGGATTCAGCTATGGAGGAACCCATGTGGGATGTTTGA 1578 0.4677 MSNVSGDEGSFSSGNNGEEVLQETQHQQPQNQLHDSTSGPSAACNTNASTNQQTKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTVYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYLQDNKNGALIAASAQMSATALLQKAAQMGATASNTINSPIMQKGFVSSTSAPDHVSSTRPPYSGAMLQHNNSYDHFSPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDSNTAGSAMNEVGMFSQMPLGSDHNHNTGLMKNVEQEVSNCSGLIHGRDVVEGNPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHQDSAMEEPMWDV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02718 525 MobiDBLite consensus disorder prediction 1 69 - -
Viun1g02718 525 Gene3D Classic Zinc Finger 138 218 - -
Viun1g02718 525 SMART c2h2final6 125 155 IPR013087 -
Viun1g02718 525 SMART c2h2final6 84 106 IPR013087 -
Viun1g02718 525 SMART c2h2final6 160 180 IPR013087 -
Viun1g02718 525 FunFam protein indeterminate-domain 12-like 63 131 - -
Viun1g02718 525 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Viun1g02718 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Viun1g02718 525 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Viun1g02718 525 Gene3D Classic Zinc Finger 62 130 - -
Viun1g02718 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 502 IPR031140 -
Viun1g02718 525 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Viun1g02718 525 MobiDBLite consensus disorder prediction 1 60 - -
Viun1g02718 525 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02718 Viun-Chr1 36824758 36827392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02718 41 362 IDZ Gene Family AT3G50700 54.701 9.89e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02718 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02718 - - gmx:100782774 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02718 1 36824758 36827392 Viun1g02718 1 36824758 36827392 ECH