Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02714 ATGAAAATGGTGGAAAGAAGAAAGCCTCTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGCTCCAACCACCAATCTCTTCGACCATGATTCTTCTCCCTCCTTCTTCAGTTTTCCTGTCGGAATCCTCCGGTTCTCCGACCTCACGAATCTCTCCGTCGACCACTCTTCCCTGCTTGCCCTCTCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACCGGTTCTTGTCAAGAATGTTGACACCAACACTCAGAAAATTGCAGTGGCTGTTGCTTTGGACACACCAGGCACCACGGCTAACACAGACTCTCCGTCTTCTAGTTCTTTATTTTCTTCTTCTTCTTCTCGAATAATGATTCTTTTTCCTTCTTGTCATTTCCCTTTCAATGGTTCTGTGTTAGATGATCAAATAGCCTATGTATCGCCACTTTTAGCCTTTAACCTTAACTTGCACGTGGCGTGCTTAAAATCCATTCTTTACCACGGGCAAGAGGCTTTGGCTTCTTATTTCGGACCTCGAGATAAAAGGGGTGATGAGGATGCTGCTAAAGGAACTGTGGATTCTGTCATCAACGTAGAATTGGAACCACTTGCTCTGCCTCCAAAATTTGCCTCCCTTCTGAGGGTTTCTTTTGTGAAGATACCAAAATGTGGCATTCTTGAATCTATTAGAGCAAGTTCACCTTTTGAGTCAGAACTGCGGCAAGACATGATCGACTTGTCATTGCAAAAGTACTTTGAAGTCGATAGGTACTTGTCCAAGGGAGATGTTTTTGGGATTAGCATAAGTTGGAATTGCAATTCCACTATTTGCGTTCCTTGTAACCAAAGATCATTAGATCAAAATGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGTTTTTTCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGGACCTGAAGGACCGGTGCCTTTGCGAGGGGACACTGTGAACATCTTGGCTTCGATACTCACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGGGTGTCTGTTCTATTGTATGGTTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGTCGACTTGGCCTGCATGTGGTGGAATATAACTGTCATGATCTTATGGTGTCTGATAGAACATCTGTTGCTCTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTATTTCGAGAATCACAATCACCCGAGGGTTCACCACATGATCAAAGAGGAAATACGTCTGAAGTTGCTTCAGTTATTAGGAAATTCACTGAGCCTGTCAGTGAACAACGTGATAGTAATTCCCTGGGGAAATCAAACGTTGAATCTGTGGAGACGAGTGCTGAAAAGGCAAGTGAACACCAGGTCCTATTGATTGCTGCTGCTGACAGTTCAGAAGGTCTTCCATCAACTATCAGACGCTGTTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATTGCAGTCATTGCAAAGTTTTTCTGAACTCTTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGATATTCGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCGAGAAATAATGCTAAAGTAGAGAAAGACGAGTCTGATGATGTAGATAGTTTTTTTAATTCCAAGATGGCAGAAGACACCAGTCACGGGAAAGTTTCACATCAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCGTCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGACACTGTTCAGTTACCTCTCTTGCATAAAGATCTATTTTCATCTGGATTACGCAAGCGATCCGGTGTTCTTTTGTACGGTCCCCCTGGAACTGGCAAAACATTATTGGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCGGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCACTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAACTATTGTATGTTGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCTGTTGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCGTTGTGTGCAGACGCTTGGTTCCATGCTGCAAAACGTAAAGTTTTGAGTGCAAATCCAGAGTCTTCCAGCAAAGATAATGAAGCAGATTCTGTTGTTGTTCAGTATGATGACTTTGTCGAGGTCTTGGAAGAGTTGTCACCTTCCCTCTCAATAGCTGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCAGATGA 2787 0.4316 MKMVERRKPLILCSTKHVINSTAPTTNLFDHDSSPSFFSFPVGILRFSDLTNLSVDHSSLLALSTPLLKTLSITSGSPVLVKNVDTNTQKIAVAVALDTPGTTANTDSPSSSSLFSSSSSRIMILFPSCHFPFNGSVLDDQIAYVSPLLAFNLNLHVACLKSILYHGQEALASYFGPRDKRGDEDAAKGTVDSVINVELEPLALPPKFASLLRVSFVKIPKCGILESIRASSPFESELRQDMIDLSLQKYFEVDRYLSKGDVFGISISWNCNSTICVPCNQRSLDQNDNLICFKVVGMEPSDEQFFRVNNTLTALVLVGSSPSALPPDLLIGGPEGPVPLRGDTVNILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPEGSPHDQRGNTSEVASVIRKFTEPVSEQRDSNSLGKSNVESVETSAEKASEHQVLLIAAADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLLQSLQSFSELFSNTDSEALVKEIVGQTSGYMPRDIRALIADAGANLFPRNNAKVEKDESDDVDSFFNSKMAEDTSHGKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSVAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSKDNEADSVVVQYDDFVEVLEELSPSLSIAELKKYEQLRDQFEGR 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02714 928 Gene3D - 818 904 - -
Viun1g02714 928 SMART AAA_5 680 820 IPR003593 GO:0016887
Viun1g02714 928 SMART AAA_5 365 525 IPR003593 GO:0016887
Viun1g02714 928 MobiDBLite consensus disorder prediction 468 485 - -
Viun1g02714 928 ProSitePatterns AAA-protein family signature. 787 805 IPR003960 GO:0005524|GO:0016887
Viun1g02714 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 924 IPR027417 -
Viun1g02714 928 PANTHER AAA-FAMILY ATPASE 59 926 - -
Viun1g02714 928 MobiDBLite consensus disorder prediction 465 486 - -
Viun1g02714 928 FunFam Peroxisomal biogenesis factor 6 642 831 - -
Viun1g02714 928 FunFam Peroxisome biogenesis protein 6 338 522 - -
Viun1g02714 928 Gene3D - 642 919 IPR027417 -
Viun1g02714 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 591 IPR027417 -
Viun1g02714 928 CDD RecA-like_PEX6_r2 656 815 IPR047533 -
Viun1g02714 928 Pfam ATPase family associated with various cellular activities (AAA) 684 816 IPR003959 GO:0005524|GO:0016887
Viun1g02714 928 Pfam ATPase family associated with various cellular activities (AAA) 369 520 IPR003959 GO:0005524|GO:0016887
Viun1g02714 928 Gene3D - 347 546 IPR027417 -
Viun1g02714 928 FunFam Peroxisome biogenesis protein 6 818 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02714 Viun-Chr1 36776041 36782175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02714 650 875 Calmodulin-binding Proteins AT3G56690 39.648 5.08e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02714 K13339 - gmx:100820183 1563.51