Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02696 ATGAGCGCTGAAGCGCCGAAACCAGCGCGACCCTGTGACTACTGTGGCCACTCCACGGCGGTTCTCTACTGCAGAGCCGATTCGGCCAAGCTCTGTTTCTCGTGCGACCGCGAGGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACGCGGACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCAACCATACTCTGTTCCACCGACACCTCTGTTCTCTGTCAGAACTGCGACTGGGAGAAGCACAACCCGGCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTCTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAGATTGAAGGGCTGTCGGATTTCTTTGTTTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTGTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCCCTGCCTAAGAATCGGAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCACTGGATCTTGAACAATATGTGCAACCAGGAAACCTGTCCTCGGCTTTTGAACGTGACGTGGAGGTTGATATCTATCCTTATCATGAGTGGCATAGAGAAAGGAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTGTACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTTGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTCAACTCTGAAACCCTACCAACTACTCCCAAAGCTGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTCTGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGTGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCCAAGATGGAGCGGGAACACTAA 1059 0.5071 MSAEAPKPARPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPALSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGLSDFFVWDAPSVVTLDDLICSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLEQYVQPGNLSSAFERDVEVDIYPYHEWHRERSEPMYQVVPPDPSLRTCTEEVPVKQSTSVGETHTFGDKGGNPSISLNSETLPTTPKAGACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEREH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02696 352 CDD Bbox1_BBX-like 11 54 - -
Viun1g02696 352 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Viun1g02696 352 SMART bboxneu5 7 54 IPR000315 GO:0008270
Viun1g02696 352 SMART bboxneu5 55 97 IPR000315 GO:0008270
Viun1g02696 352 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Viun1g02696 352 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Viun1g02696 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 348 - -
Viun1g02696 352 Pfam CCT motif 306 348 IPR010402 GO:0005515
Viun1g02696 352 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Viun1g02696 352 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Viun1g02696 352 MobiDBLite consensus disorder prediction 263 283 - -
Viun1g02696 352 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02696 Viun-Chr1 36706080 36710839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02696 4 321 C2C2-CO-like Transcription Factor Family AT2G47890 41.003 2.38e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun1g02696 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02696 - - gmx:100817838 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02696 1 36706080 36710839 Viun1g02696 1 36706080 36710839 ECH
Viun1g02696 1 36706080 36710839 Viun7g01668 7 21497453 21499264 PCT