Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02687 ATGAGGAGGAGGAGAGAGATGGAAGCCGCACCCAGAGACGGACTTCCCCATAACCGAGGTGGCACTGATGATTTGTACACTGAACTGTGGCGTGCATGTGCGGGGTCTTCCGTTTATGTTCCTCGTGTTGGAGAGAGGGTTTTCTACTTTCCTCAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGACACATGGAAATTCCTGTGTATGATTTGCCTCCTAAGATCTTATGCAGAGTTGTGTGTGTTGTATTAAAGGCCGAAACTTACACCGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGCCCAGGCAAAACCACTTTGGTTTAGAGAACGAAGATAATCTTGTTCCATCCAGAACTACAACCTACTCCTTCAGTAAGGTACTCACTCCGTCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACACGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTGCACAGGAAATTGTTGCCAAGGACTTGCACGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACCTGCTAACTAGCGGTTGGAGCACGTTCGTGAGTGCAAAGAAACTCGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGTATGGAGAAGTTCGTGTTGGGATTCGTCGGGCAAGTAGACATCACAGCAATGCATCTCCGTCGTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTTGCCACAGGAGCCATGTTCACTGTCTATTACCACCCTTGGACGAATCCCTTTGAGTTTATCATTCCTCTGCAAAACTATTTGAAGTCAACTGTACCCGTCTATTCAATTGGAACGAGAGTTCAAATGCAGTGTGATGTTGAAGAGTCTCTAAGAAGATATGCAGGTACGATAATTGGTAATGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATAGTAGATGCCTTCATGCACCCTGAAAGGGTCTGTCCTTGGTGGATTGAGCCCTTGGAGTCTGGGATGGAAAAGCACATTCCTATTCTCCCCAACCCAAAAAAGGCACATGTCCTTAACCAGCGCCCATTGCCTGGACTAAATGTCTTTGCCATGGATGATGCTGGTGCTCAGAGTTCAGCCAGGGCGGTAGCGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCAAGGGCATTGCAAAGACCACCACCGAAGTTCTCAATCGGTGGCTCACAATTTGGGAAGGAGAATCTGAACCAGCATCCCTTTCTGATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAATGTCATTGCCACATGAAGATTTATCAATTTCAAGTTCAAATTTAAGCTCCATTTGTTCTGAATCCTTGGGATGGCCACCTTCTGAATCTAGAAATGAAAATGATGCTCCACTTGGTCATCTTGGCAGTTATAACAAATACAAGCTCTTTGGTGTTAACTTAATTGAACGCCAACCGGAGCTCCCTTCACCACAATTTGCTGGTTTCAGCAAAACTCCAAGTCTGCTTTCTAGTCCTCCAATGTGTGTTACCTCCGGGAAAACATGTAAGAAGTGTCGCTCTGTCAATAACCGTAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGATCTAACCCGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCCATGTTTGATTTTGGAGGCAGCTTAGTCAATGGAACTAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGAGATTACCCGTGGCAGGATTTCCAGTGTATGGTGCAAAAGATGATCATATGTCAGAAGGATGGTATCAACAATCTCAATCCAAGCTCCTCAGCAGATCCTCCAAGCCTTTAG 1992 0.4613 MRRRREMEAAPRDGLPHNRGGTDDLYTELWRACAGSSVYVPRVGERVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPPKILCRVVCVVLKAETYTDEVFAQVTLVPEPRQNHFGLENEDNLVPSRTTTYSFSKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVSAKKLVAGDSCIFVSGEYGEVRVGIRRASRHHSNASPSSSLISGHSMQLGILASASHAVATGAMFTVYYHPWTNPFEFIIPLQNYLKSTVPVYSIGTRVQMQCDVEESLRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDAIVDAFMHPERVCPWWIEPLESGMEKHIPILPNPKKAHVLNQRPLPGLNVFAMDDAGAQSSARAVADRDLQGQDYSGLSTSRALQRPPPKFSIGGSQFGKENLNQHPFLMQDILHKSLGRSMSLPHEDLSISSSNLSSICSESLGWPPSESRNENDAPLGHLGSYNKYKLFGVNLIERQPELPSPQFAGFSKTPSLLSSPPMCVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLTRFRGYDELIAELDSMFDFGGSLVNGTSGWHVTCIDDDGDMMFLRDYPWQDFQCMVQKMIICQKDGINNLNPSSSADPPSL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02687 663 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Viun1g02687 663 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Viun1g02687 663 Gene3D - 130 233 IPR015300 -
Viun1g02687 663 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Viun1g02687 663 SMART B3_2 132 234 IPR003340 GO:0003677
Viun1g02687 663 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun1g02687 663 FunFam Auxin response factor 297 368 - -
Viun1g02687 663 MobiDBLite consensus disorder prediction 1 19 - -
Viun1g02687 663 FunFam Auxin response factor 130 234 - -
Viun1g02687 663 MobiDBLite consensus disorder prediction 1 21 - -
Viun1g02687 663 SUPERFAMILY CAD & PB1 domains 567 640 - -
Viun1g02687 663 Gene3D - 560 653 - -
Viun1g02687 663 CDD B3_DNA 131 232 IPR003340 GO:0003677
Viun1g02687 663 Gene3D - 297 370 - -
Viun1g02687 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun1g02687 663 ProSiteProfiles PB1 domain profile. 564 647 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02687 Viun-Chr1 36623873 36632088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02687 22 654 B3 DNA Binding Superfamily AT1G59750 39.970 6.34e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun1g02687 B3 1.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02687 - - gmx:100802387 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02687 1 36623873 36632088 Viun1g02687 1 36623873 36632088 ECH