Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02681 ATGCGTGTCACAATAAGAAGACGCTACCCGGGGTTGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTATCCGAAGTCGAAATATCTGCGCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACGAAAGACCAGGCGCTTGCTGCTTTGGAGGCAATTAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCATAAAGCACAGTCCCAAGCTTCTAATGTACCACACACTGATTCTCAGCACCCGTCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTGATGCCCTACCGCATGCCACCAATGCAGAGTCAACATGGTTTCCATAATATGATGCCCCATATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAACTATCACGTGGCTCCTGCAAGTTACGTTGGTTCTTATCCTGCTGTAACAGGTCTGCAACATCCCATGGCATATTCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCTGGCTCTGTTTCACCTGCTAGTGGAAATAACAACACTGCTGCATCTTCAGGTGGCAGCAAAAATTCTGGGGGACAGGTCGAAGGACCACCCGGTGCCAACCTATTTATATATCACATACCTCAAGAATTTGGAGATCAAGAACTTGCTAATGCTTTTCAGCCATTCGGTATGGTCTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCTCCAGAGGCTGCTCAATCTGCGATCGGTATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTTCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1080 0.4361 MRVTIRRRYPGLASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAHKAQSQASNVPHTDSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYSTGMISPRPMNASPGSVSPASGNNNTAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELANAFQPFGMVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIGMMNGFQLGGKKLKVQLKRDNKQGKPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02681 359 MobiDBLite consensus disorder prediction 122 136 - -
Viun1g02681 359 MobiDBLite consensus disorder prediction 238 269 - -
Viun1g02681 359 FunFam RNA-binding protein BRN1 isoform X1 28 120 - -
Viun1g02681 359 MobiDBLite consensus disorder prediction 238 265 - -
Viun1g02681 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 346 IPR000504 GO:0003723
Viun1g02681 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 96 IPR000504 GO:0003723
Viun1g02681 359 PANTHER RNA BINDING PROTEIN 20 353 - -
Viun1g02681 359 SMART rrm1_1 32 107 IPR000504 GO:0003723
Viun1g02681 359 SMART rrm1_1 275 348 IPR000504 GO:0003723
Viun1g02681 359 Gene3D - 240 351 IPR012677 -
Viun1g02681 359 Gene3D - 25 120 IPR012677 -
Viun1g02681 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 111 IPR000504 GO:0003723
Viun1g02681 359 FunFam RNA-binding protein BRN1 241 351 - -
Viun1g02681 359 CDD RRM3_CELF1-6 276 348 - -
Viun1g02681 359 SUPERFAMILY RNA-binding domain, RBD 31 354 IPR035979 GO:0003676
Viun1g02681 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 352 IPR000504 GO:0003723
Viun1g02681 359 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02681 Viun-Chr1 36594613 36599509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02681 267 349 Eukaryotic Initiation Factors Gene Family AT1G22760 37.349 8.38e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02681 K13207 - gmx:100813239 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02681 1 36594613 36599509 Viun1g02681 1 36594613 36599509 ECH
Viun1g02681 1 36594613 36599509 Viun7g01657 7 21384208 21388709 PCT