Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02680 ATGGCGGAAGAGAGTAAATCTAGCGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCGGAACTCCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAAGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTATCCGAAGTCGAAATATCTGCGCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACGAAAGACCAGGCGCTTGCTGCTTTGGAGGCAATTAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCATAAAGCACAGTCCCAAGCTTCTAATGTACCACACACTGATTCTCAGCACCCGTCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTGATGCCCTACCGCATGCCACCAATGCAGAGTCAACATGGTTTCCATAATATGATGCCCCATATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAACTATCACGTGGCTCCTGCAAGTTACGTTGGTTCTTATCCTGCTGTAACAGGTCTGCAACATCCCATGGCATATTCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCTGGCTCTGTTTCACCTGCTAGTGGAAATAACAACACTGCTGCATCTTCAGGTGGCAGCAAAAATTCTGGGGGACAGGTCGAAGGACCACCCGGTGCCAACCTATTTATATATCACATACCTCAAGAATTTGGAGATCAAGAACTTGCTAATGCTTTTCAGCCATTCGGTATGGTCTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCTCCAGAGGCTGCTCAATCTGCGATCGGTATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTTCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1305 0.4483 MAEESKSSEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAHKAQSQASNVPHTDSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYSTGMISPRPMNASPGSVSPASGNNNTAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELANAFQPFGMVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIGMMNGFQLGGKKLKVQLKRDNKQGKPY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02680 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 171 IPR000504 GO:0003723
Viun1g02680 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 421 IPR000504 GO:0003723
Viun1g02680 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Viun1g02680 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 349 427 IPR000504 GO:0003723
Viun1g02680 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 186 IPR000504 GO:0003723
Viun1g02680 434 CDD RRM3_CELF1-6 351 423 - -
Viun1g02680 434 Gene3D - 103 194 IPR012677 -
Viun1g02680 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 126 138 IPR002343 GO:0003723|GO:1990904
Viun1g02680 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 18 33 IPR002343 GO:0003723|GO:1990904
Viun1g02680 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 111 126 IPR002343 GO:0003723|GO:1990904
Viun1g02680 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 167 184 IPR002343 GO:0003723|GO:1990904
Viun1g02680 434 MobiDBLite consensus disorder prediction 190 211 - -
Viun1g02680 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 99 IPR000504 GO:0003723
Viun1g02680 434 MobiDBLite consensus disorder prediction 313 340 - -
Viun1g02680 434 FunFam RNA-binding protein BRN1 5 102 - -
Viun1g02680 434 MobiDBLite consensus disorder prediction 197 211 - -
Viun1g02680 434 Gene3D - 4 102 IPR012677 -
Viun1g02680 434 MobiDBLite consensus disorder prediction 313 344 - -
Viun1g02680 434 FunFam RNA-binding protein BRN1 isoform X1 103 195 - -
Viun1g02680 434 SUPERFAMILY RNA-binding domain, RBD 106 429 IPR035979 GO:0003676
Viun1g02680 434 CDD RRM1_2_CELF1-6_like 19 95 - -
Viun1g02680 434 FunFam RNA-binding protein BRN1 316 426 - -
Viun1g02680 434 SMART rrm1_1 19 95 IPR000504 GO:0003723
Viun1g02680 434 SMART rrm1_1 350 423 IPR000504 GO:0003723
Viun1g02680 434 SMART rrm1_1 107 182 IPR000504 GO:0003723
Viun1g02680 434 Gene3D - 315 426 IPR012677 -
Viun1g02680 434 PANTHER RNA BINDING PROTEIN 17 428 - -
Viun1g02680 434 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02680 Viun-Chr1 36594593 36599511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02680 346 430 Eukaryotic Initiation Factors Gene Family AT1G71770 39.773 3.33e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02680 K13207 - gmx:100813239 792.727