Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02668 ATGGGCGCCAATTCCATGCTCTCCGAATTCTCTCACGATGTCGACGATCAGATCTCCCAGCTAATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGTTTTATGTGAGAAGGCCAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCGGTGACAATTTGTGGCGATATTCATGGACAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGACACTAACTACTTGTTTATGGGTGATTATGTGGATCGCGGTTACTATTCAGTTGAGACTGTAACTCTCCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGGATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTGTATGGATTTTATGATGAATGCCTTCGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGATCTTTTTGATTTTTTCCCATTGACAGCGTTGGTTGAATCAGAAATATTCTGCTTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATACGGAACTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGCCCCATGTGTGATTTATTGTGGTCTGACCCAGATGACAGATGCGGCTGGGGAATTTCTCCTCGAGGTGCTGGATATACTTTTGGCCAGGACATATCAGAACAATTTAATCACACAAACAGCCTCAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCGCCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGACTGCAAGGGCCACACATTTATTCAGTTTGAACCTGCGCCTAGGAGAGGAGAACCTGATGTGACTCGTAGAACGCCTGACTACTTCTTATAA 942 0.4363 MGANSMLSEFSHDVDDQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Viun1g02668 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Viun1g02668 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Viun1g02668 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Viun1g02668 313 Gene3D - 7 313 IPR029052 -
Viun1g02668 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Viun1g02668 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Viun1g02668 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 313 IPR047129 GO:0004722
Viun1g02668 313 FunFam Serine/threonine-protein phosphatase 6 313 - -
Viun1g02668 313 SUPERFAMILY Metallo-dependent phosphatases 11 298 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02668 Viun-Chr1 36492038 36498061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02668 19 243 Calmodulin-binding Proteins AT5G63870 34.457 4.18e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02668 K04382 - gmx:100775812 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02668 1 36492038 36498061 Viun1g02668 1 36492038 36498061 ECH