Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02664 ATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAACCCACGGCAGGTGAATCTGCTAGCCAAGCAGTGACAAGCAGGTACCTGCAGGAAAATGCTAGTGACAGTGATGATTCCGACGAGAAGCGTGTTGTGCGGTCGGCAAAAGATAAGCGTTTCGAGGAGATGGCGTCCACTGTTGATCAGATGAAGAATGCTATGAAGATTAATGATTGGGTGAGCCTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGTGAAGGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACACCATGAAGCAGAAGCTGAAGAAAAATAATAAGCAGTACGAGGATTTGATTAATAAGTGTAGGGAGAATCCTGAGAGCGACGAGGAGAAGGAAGAAGAGGAGAGCGAGGAAGAGTATGAGAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAACCAGAAGCCAAATCTGATTCTGAAGCTTCTCAGTATGATGATGAAAATGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCCTTTGGATAGACAATTTATGAAAGACCCCAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCAGAAAGGGGACTGGGAGATTCGAACAGGTTGAGCAGCTTACTTTCTTAACGAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTTAATCCTGGTCTGAATGGATACATGCCAATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTCCAGCATCCAAACATAGTGGTCGATGATTCTGTGGAACCAGATGAGAATGAAACTCAGAAAGGTACTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGGATTGATGTTGAGTTTTTCAAGAGCTTGCAATGCATAGATCCTCATACACGTGACTATGTGGAGAGACTTAGGGATGAACTGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGAGTTGAGCTCATTTACTACAAACCGCAAGAAGTTTATGATGCTGAAAAATTGACTGAGCTGACAGAGAATGGAGATGATGGAGGGGAGGCAAGTGAGGAGTCAAAAGGATTTGAGGAATCAAGAATTCCTTCTGCATTTATTGTTACCCCAGAGATTGGCCGGAAGCCCACATTCCCTGATAATAGCAGGACCATAATGGATGTATTGGTATCATTGATTTACAAATACGGAGACGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTCCTTGATGAGTTCTCAATTGCCCGTGATCTGCTTCTTATGAGTCATTTGCAAGATAGTATTCAACACATGGACATTTCAACTCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGAAGCACATGGTTGTCTCTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACGCCAAGGTGTGTCACAAAGTCGCTATCATGAGAAGACTCCGGAACAGGAAAGGTTGGAAAGAAGGAGGCAAATGCCATATCATATGCACATCAATCTTGAACTCCTGGAGTCAGTACATCTGGTATCTGCCATGCTGCTGGAAGTTCCTAATATGGCTGCCAATGTTCATGATGCTAAACGCAAGGTAATTTCTAAGACTTTCCGTCGCTTGCATGAGGCCAGCGAGAAGCAAACGTTCACTGGTCCACCGGAAAATGTGAGGGACCATGTTATGGCTGCCACAAGGTTTCTCATAAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTCGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCGCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTTCAAAAATTTTTGATCTCTCTGTTTCTTGCACTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTCCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAGGATGTTGAATACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAGTTATCTATCCTTGCAGAGAGCAATGAAAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCCGCCGGTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGGGCCTTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCTGGAGGATATGGTGGTGGTGGAAGGTCAATAGGTCAAGTAGCCGCAGGTGGCTATTCCAGGGATCGAATGGGACGGGGAACAGGTGGTGGCTACCAGAGTGGACGGTATCAAGATGGAGGTTATGGGAGGAGTGCTCAAGGGGGTTCTGCATTGAGGGGACCTCAGGGCGATACATCTTCACGCATGGTTAGCCTTAAAGGTGTTCGAGCTTAA 2799 0.4516 MASRFWTQGGSDSEEEESDYDEEVEPTAGESASQAVTSRYLQENASDSDDSDGXKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEDLINKCRENPESDEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDESXDAGDGPWDQKLSKKDRXLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGYMPINVWKKCVQNMLIILDILVQHPNIVVDDSVEPDENETQKGTDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPXFLVLAQNVQEYLERVGXFKAASKVALRRVELIYYKPQEVYDAXEKLTELTENGDDGGEASEESKGFEESRIPSAFIVTPEIVXRKPTFPDNSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSIQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLXQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLHEASEKQTFTGPPENVRDHVMAATRFLIKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFASSYESLSLDQLSKIFDLSVSCTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASSGGRWQDLGLSQPRQGSGRAGGYGGGGRSIGQVAAGGYSRDRMGRGTGGGYQSGRYQDGGYGRSAQGGSALRGPQGDTSSRMVSLKGVRA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02664 940 MobiDBLite consensus disorder prediction 839 940 - -
Viun1g02664 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Viun1g02664 940 Coils Coil 144 171 - -
Viun1g02664 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Viun1g02664 940 Pfam PCI domain 660 788 IPR000717 -
Viun1g02664 940 MobiDBLite consensus disorder prediction 849 863 - -
Viun1g02664 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Viun1g02664 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 935 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Viun1g02664 940 MobiDBLite consensus disorder prediction 221 237 - -
Viun1g02664 940 MobiDBLite consensus disorder prediction 30 44 - -
Viun1g02664 940 MobiDBLite consensus disorder prediction 175 193 - -
Viun1g02664 940 MobiDBLite consensus disorder prediction 155 174 - -
Viun1g02664 940 MobiDBLite consensus disorder prediction 12 26 - -
Viun1g02664 940 MobiDBLite consensus disorder prediction 1 62 - -
Viun1g02664 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Viun1g02664 940 MobiDBLite consensus disorder prediction 194 212 - -
Viun1g02664 940 MobiDBLite consensus disorder prediction 141 237 - -
Viun1g02664 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Viun1g02664 940 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02664 Viun-Chr1 36453911 36457981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02664 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 68.105 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02664 K03252 - gmx:100781967 1555.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02664 1 36453911 36457981 Viun1g03124 1 39464859 39471721 ECH
Viun1g02664 1 36453911 36457981 Viun1g02664 1 36453911 36457981 ECH