Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02635 ATGGAAGACAATAAAAAAAGTAAAATGATATCGGCTGTGGCCTTTGTAGAAGGGGGGATTCAAGACTCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTCTGCAAGTGATCCTCCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCCTACAAGTCAGGAATCGTTTAAGGCAGTAGAGCAGGAGAGGAAGTTGAGAGTTACTACATCAAGAAATGCTTCTCTTTTTCGTCACCGTACATTTAATGATTTTGAAGTGCAGCACTTGCGCATGAATGTAAATGATATTGAGCTTGAAGACCGAATTATTCAACATTTAGCTGTTGCTGCAGCGATGAGGAGAGCAGAGCAACTTGGTCGTAGGGTAGGACGACAAGCTCGTTCATCATCTCATGGTCATCCACACTCGTCAGGGTTATCTAATGAAGAGAAAAATGACCAAACGGGAAGTCCTAATACAAGTCCATCTACTCCAATAAAATCTGACAGATATGGAGTGTTGCAACAGATGCTGCGAGTTCGAACTCAAAGCTCTTCTTCAGCTTCTGGATCTACCAATGATAGAGGCTCTACTACTCCCTCGTCATCAGTAGATAAAGCAGAGTCATCAGAGTTCCAGTCACATTCTGATTCACTGAGGTCCAGACTCACTGCAGTGTCTGCGAGATACAAAGAATCAATCTCAAAGGGTGCAAGGGGATGGAAGGAAAGGTTCTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGGGAGATGAATGCTGATATTGCTAGTGTATCCCGATTAAAGGAATCCCTTGAATCTAGTGAGAATAGTAAAGCTGTGGGTACTTCTTTGCCTAGTCATATGGAAGATTGTTCCATTGGAGAGGTGAGCAACCACAACGATGTTGAAGTTAGCGGGGAGACCTCTTCACATGATGACAATACTCCACCTGCTTGTTCTGCTACATCACATTTAAATTGA 1062 0.4341 MEDNKKSKMISAVAFVEGGIQDSCDDACSICLEEFSASDPPTLTNCKHEFHLHCILEWCQRSSQCPMCWQSISLKDPTSQESFKAVEQERKLRVTTSRNASLFRHRTFNDFEVQHLRMNVNDIELEDRIIQHLAVAAAMRRAEQLGRRVGRQARSSSHGHPHSSGLSNEEKNDQTGSPNTSPSTPIKSDRYGVLQQMLRVRTQSSSSASGSTNDRGSTTPSSSVDKAESSEFQSHSDSLRSRLTAVSARYKESISKGARGWKERFFCRSCSMSELGSETRRREMNADIASVSRLKESLESSENSKAVGTSLPSHMEDCSIGEVSNHNDVEVSGETSSHDDNTPPACSATSHLN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02635 353 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Viun1g02635 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 77 IPR013083 -
Viun1g02635 353 MobiDBLite consensus disorder prediction 156 188 - -
Viun1g02635 353 MobiDBLite consensus disorder prediction 295 310 - -
Viun1g02635 353 MobiDBLite consensus disorder prediction 200 240 - -
Viun1g02635 353 SMART ring_2 28 68 IPR001841 -
Viun1g02635 353 MobiDBLite consensus disorder prediction 146 188 - -
Viun1g02635 353 Pfam Ring finger domain 27 68 IPR001841 -
Viun1g02635 353 MobiDBLite consensus disorder prediction 325 353 - -
Viun1g02635 353 MobiDBLite consensus disorder prediction 295 353 - -
Viun1g02635 353 SUPERFAMILY RING/U-box 21 76 - -
Viun1g02635 353 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 77 - -
Viun1g02635 353 MobiDBLite consensus disorder prediction 200 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02635 Viun-Chr1 36304472 36309910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02635 25 76 C3H Transcription Factor Family AT4G00335 44.231 3.49e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02635 K19043 - gmx:100800419 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02635 1 36304472 36309910 Viun1g02635 1 36304472 36309910 ECH
Viun1g02635 1 36304472 36309910 Viun7g00228 7 1599685 1603609 PCT