Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02614 ATGTTCCATGACATAACCATTTCTATTACCTCAACTCTCAACTTTCAACTCCAGAAGAAGAAGTCATTATACTATTTCATACATAGGATGAGCAGCAACAGTGCAGTTAACTCCCCTGGATTCCTTGGCTCAAGCAACATCAATGGCTACAGCTATGGCATAGGAATCTCCATTGGAATACTGTTGCTCATCATAACCATCACTCTAACTTCATACTTCTGCACCAGAACACATGTCTCGTTTGCTCCACCTTCCAGGAACAGAAGACTCACCTCGAATGCTCTTGAACCACACCACTCTATAGTTGATGTGAGTTTGGATGAAGCCACTATTCTGAGTTATCCAACCCTGCTGTACTCTGAAGCGAAGGTTCAGAAGTGCGATTCCACTGCAACGTGTTGCTCCATTTGTTTGGCGGATTACAAGGATACTGATACGCTTCGCATGCTACCTGATTGTGGACACCAATTCCACCTCAAATGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCCGTTTGTAGAACATCTCCGATTCCAACGCCCCTCTCAACTCCTCTCGCTGAAGTCGTTCCGTTGGCTACCAGACACGATTCGTAG 603 0.4527 MFHDITISITSTLNFQLQKKKSLYYFIHRMSSNSAVNSPGFLGSSNINGYSYGIGISIGILLLIITITLTSYFCTRTHVSFAPPSRNRRLTSNALEPHHSIVDVSLDEATILSYPTLLYSEAKVQKCDSTATCCSICLADYKDTDTLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLATRHDS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02614 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 180 IPR013083 -
Viun1g02614 200 Pfam Ring finger domain 134 176 IPR001841 -
Viun1g02614 200 FunFam E3 ubiquitin-protein ligase ATL6 95 181 - -
Viun1g02614 200 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Viun1g02614 200 CDD RING-H2_EL5-like 133 176 - -
Viun1g02614 200 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 41 190 IPR045899 -
Viun1g02614 200 SMART ring_2 134 175 IPR001841 -
Viun1g02614 200 SUPERFAMILY RING/U-box 133 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02614 Viun-Chr1 36236880 36237986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02614 40 196 C3H Transcription Factor Family AT2G35910 64.151 2.79e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02614 - - vun:114162275 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02614 1 36236880 36237986 Viun7g00207 7 1493780 1494901 PCT