Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02613 ATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTCGATGAACCTGAAACATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACCACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAGGATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCACAAAGGGAACATCCAACTCAAGTACCCAACCTGGGATGAATCTTACAATGTTCTTGAAGAGGAACAATTGAGGATGTTTGTTGGCATTCTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAACATGTTCAAGCGTGATTCGAAGGGAAAAGCAATAGCAGAATCAGACTATGATGGTAGTCACCTCAGTTTTATGCAGAACATGTCTCAAACACAGAACATGTCTCAAACACAGGTTTTTCCTACTAATGATAACAGTCAAGTAACATCATATTCATGTCATCAGAGTCAAAGTTCTCTACCTACTTTGTTTCAACTAGGTCAAAACTGTACCCAATTGATTGAAAAAAGTACAGTAGTGGATTGGAGTAATCAAGTTGGTGCAAGTGATCACAGAATGAGTACACAAGAAGATGGATTAGACAAAAACCAAAACTCCTTACCATGTTTTTACAATGCAAATATTCAAACAATGCATCCATATAATAATGTTGCTTTGCAAACTCTCCCTTCTCAATTGCAGTACGATGCAACATTTCAGACCCTGTCAAATCGACCAGGTCCATCACAGGGATTTACGCCTAATGGCTATGATCATTCTACTATACTTCAACCTCATTTTTTAGACCATATACACAGAAGAAAGTAG 948 0.3861 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRMNMFKRDSKGKAIAESDYDGSHLSFMQNMSQTQNMSQTQVFPTNDNSQVTSYSCHQSQSSLPTLFQLGQNCTQLIEKSTVVDWSNQVGASDHRMSTQEDGLDKNQNSLPCFYNANIQTMHPYNNVALQTLPSQLQYDATFQTLSNRPGPSQGFTPNGYDHSTILQPHFLDHIHRRK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02613 315 PANTHER MADS BOX PROTEIN 4 122 - -
Viun1g02613 315 SMART madsneu2 1 54 IPR002100 GO:0003677|GO:0046983
Viun1g02613 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 42 IPR002100 GO:0003677|GO:0046983
Viun1g02613 315 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Viun1g02613 315 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Viun1g02613 315 CDD MADS_SRF_like 1 66 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun1g02613 315 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Viun1g02613 315 Gene3D - 6 91 IPR036879 GO:0003677|GO:0046983
Viun1g02613 315 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02613 Viun-Chr1 36229927 36230874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02613 1 143 Type I MADS-box Gene Family AT5G55690 35.135 1.53e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun1g02613 SRF-TF 4.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02613 - - ccaj:109800518 376.326