Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02612 ATGCCAAGGAGAAAGAAAGTGACACTAAAACTGATAGAGAATTTTGTGGCAAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGATGGAAGATATTACCACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGCCCAGGGGACAACGTGCCAACTGTGTGGCCATCCCATGATATTGCTAAAGAGTTGCTCCACAAGTTTGAGAATGCTCCATTGCCAGAAAGGGTAAAAAAAAATGTTACTCCACAAGTTTATATCGAGCAGATGAACAGAAAGATTGAAAGACAAGTCATGAAACTGAAGAAGAAGAACGATGAGAGAGACATGTCAAATTTCTTGTACAAAATACATGAGGGTAAGTCTTTATCGGATCTTGATGCTAGCGATATATCTCGTTTACTTTGTTATGTGGAGGGAAAGTTGAAGTGTGGTGGAGTAAAAGTTGACATTTCTAAACAACAGTTATCAACTTATAAACCTCCGACACCACTGGTTTCTTTTCCTCTGCAGAATGACATTGATTCTTGTGCGAACATAGATGAACAAGTTTTTCAACAACAATCATCATTAGATTCAACGAAAGAAACTGGTCCAATGAACAGTGATTCTGATAATAAGGGGTTGTCTCAAGTCAGTGTTGAAAGTTTGAATTTGGATGATACTGATGTGGTGTTACCTTCTGGAAATTTTAATGATGTGATTGATGATAATGACTTGGCATTTGGGATGATATTGCCTCAAGATAATTTTATAGATCTTTGTGATAATGGTGATTTAGGACTTTTACATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATAG 843 0.3677 MPRRKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGKSLSDLDASDISRLLCYVEGKLKCGGVKVDISKQQLSTYKPPTPLVSFPLQNDIDSCANIDEQVFQQQSSLDSTKETGPMNSDSDNKGLSQVSVESLNLDDTDVVLPSGNFNDVIDDNDLAFGMILPQDNFIDLCDNGDLGLLHGSSSGEITGNDI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02612 280 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Viun1g02612 280 MobiDBLite consensus disorder prediction 192 212 - -
Viun1g02612 280 Coils Coil 91 111 - -
Viun1g02612 280 SUPERFAMILY SRF-like 4 90 IPR036879 GO:0003677|GO:0046983
Viun1g02612 280 CDD MADS_SRF_like 4 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun1g02612 280 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Viun1g02612 280 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Viun1g02612 280 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Viun1g02612 280 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Viun1g02612 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 55 IPR002100 GO:0003677|GO:0046983
Viun1g02612 280 Gene3D - 16 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02612 Viun-Chr1 36225153 36225995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02612 4 171 Type I MADS-box Gene Family AT1G65300 29.412 5.59e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun1g02612 SRF-TF 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02612 - - vun:114190983 554.673